1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cgtgcaaattcaaaattctcttgcgttaagcgcatttcatggcatccctttatcttttttatatatttgagtttgacaaatgttgatctccatcatgcagGCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCCGAGTGCTAAAGAATTTCGGCTTACTGTCGGATGGGTATACGATAGGCAT
species | Oryza sativa |
transcript | LOC_Os01g08020.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GAGAGCTAAAGCACAGAACTTTCAACCACCGTGAAGAAAGGCACCCGCAG GCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCCEST: gi|88375875|gb|CI528179.1|CI528179
genomic: GAGAGCTAAAGCACAGAACTTTCAACCACCGTGAAGAAAGGCACCCGCAGgtaaactatt ... catcatgcagGCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCC
EST: GAGAGCTAAAGCACAGAACTTTCAACCACCGTGAAGAAAGGCACCCGCAG GCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCCEST: gi|88831559|gb|CI369241.1|CI369241
genomic: GAGAGCTAAAGCACAGAACTTTCAACCACCGTGAAGAAAGGCACCCGCAGgtaaactatt ... catcatgcagGCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCC
EST: GAGAGCTAAAGCACAGAACTTTCAACCACCGTGAAGAAAGGCACCCGCAG GCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCCEST: gi|86526131|gb|CI166337.1|CI166337
genomic: GAGAGCTAAAGCACAGAACTTTCAACCACCGTGAAGAAAGGCACCCGCAGgtaaactatt ... catcatgcagGCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCC
EST: GAGAGCTAAAGCACAGAACTTTCAACCACCGTGAAGAAAGGCACCCGCAG GCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCCEST: gi|86425838|gb|CI070935.1|CI070935
genomic: GAGAGCTAAAGCACAGAACTTTCAACCACCGTGAAGAAAGGCACCCGCAGgtaaactatt ... catcatgcagGCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCC
EST: GAGAGCTAAAGCACAGAACTTTCAACCACCGTGAAGAAAGGCACCCGCAG GCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCCEST: gi|88907839|gb|CI091237.1|CI091237
genomic: GAGAGCTAAAGCACAGAACTTTCAACCACCGTGAAGAAAGGCACCCGCAGgtaaactatt ... catcatgcagGCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCC
EST: GAGAGCTAAAGCACAGAACTTTCAACCACCGTGAAGAAAGGCACCCGCAG GCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCCEST: gi|88415901|gb|CI536055.1|CI536055
genomic: GAGAGCTAAAGCACAGAACTTTCAACCACCGTGAAGAAAGGCACCCGCAGgtaaactatt ... catcatgcagGCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCC
EST: GAGAGCTAAAGCACAGAACTTTCAACCACCGTGAAGAAAGGCACCCGCAG GCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCC
genomic: GAGAGCTAAAGCACAGAACTTTCAACCACCGTGAAGAAAGGCACCCGCAGgtaaactatt ... catcatgcagGCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCC
ccctttatcttttttatatatttgagtttgacaaatgttgatctccatcatgcagGCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCCGAGTGCTAAAGAATTTCGGCTTACTGTCGGATGGGTATACGATAGGCAT
tgttgat putative branch site (score: 5)
tctccatc CT-rich tract
ttttttatatatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtgcaaattcaaaattctcttgcgttaagcgcatttcatggcatccctttatcttttttatatatttgagtttgacaaatgttgatctccatcatgcagGCGCATACAAAAGCCGTTCAGCCCAGGTGTGGAGATACAGAAAACTGGTCCGAGTGCTAAAGAATTTCGGCTTACTGTCGGATGGGTATACGATAGGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
cgtgcaa
- - - - - - - - -ctcttgc
- - - - - - - - - - - - - - - - - tttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttga