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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttgcaggcaatagctaaaatgccacaaatagcctgggttcacaatctcttttgctcggtcttttactgcatttcttgcaacgtattcttccatgcacttgtaactaaccttttctgatgcggtgcaccaaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGGGCCGCAGCTATTGATCTGTAACGGATCTCGGTTGTGATCATTCATTCCT

Basic information

species Oryza sativa
transcript LOC_Os12g25710.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g25710.2 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G094123_T01 (Zea mays), 3'ss of exon 11
gtatgctttgcaggcaatagctaaaatgccacaaatagcctgggttcacaatctcttttgctcggtcttttactgcatttcttgcaacgt-attcttccatgcacttgta-actaaccttttctgatgcggtgcaccaaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGGGCCGCAGCTATTGAT---CTGTAACGGATCTCGGTTGTGATCATTCATTCCT
                     ||     | |  |   |||||  | ||   |  || | | |   |  |||  |  | || |||||   | ||  || ||   | |   |  || ||||    || | |     ||| ||||||||| |||   |||||||| ||||||||||| |||||||| ||||| ||||||||||||||||| ||||   ||||   ||   |   ||  |   ||||| | ||
--------------------gtatggctctatgag-ggcctgaatgcaagttacctatgggtt--ttctttgatataattgttgcattattatattttcaaatattgacatgctgacctgccttg-taca----acctaaattcagGTACCCTGTGCTTTGCATCTGGAAAGCCAGCGAAGAAGTGGTCGTTCTGGGGCCGCAGCTACTGATTGCCTGTGCTGGGA-TTATTTCCGG--ATTCAGTTCT

upper sequence: LOC_Os12g25710.2 (Oryza sativa), 3'ss of exon 12
lower sequence: AC202120.3_FGT003 (Zea mays), 3'ss of exon 2
gtatgctttgcaggcaatagctaaaatgccacaaatagcctgggttcacaatctcttttgctcggtcttttactgcatttcttgcaacgtattcttccatgcacttgtaactaaccttttctgatgcggtgcaccaaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGGGCCGCAGCTATTGATCTGTAACGGATCTCGGTTGTGATCATTCATTCCT
                              |    | |    ||  |  |||     ||  |   | | |   | |  || ||   |    |   |   | || ||  || ||     ||   |||| |   ||| ||||||||| | |   |||||||| ||||||||||| || ||||| ||||| || |||||||||||||| |||                                   
----------------------------gtatggctcgatgaggccctgaatgcaagtttatgattttctctttacccttgttatgattgttgtattactacattttcaaata-----ttgccatgctg---acctaaattcagGTATCCTGTGCTTTGCATCTGGAAAGCCAGCAAAGAAGTGGTCGTTTTGGGGCCGCAGCTACTGA-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88254641|gb|CI353465.1|CI353465
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88842104|gb|CI081360.1|CI081360
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88270301|gb|CI385559.1|CI385559
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|29665238|gb|CB661513.1|CB661513
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTTTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|29612729|gb|CB617742.1|CB617742
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88470176|gb|CI407447.1|CI407447
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88983148|gb|CI020712.1|CI020712
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|86833961|gb|CI338332.1|CI338332
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|86842058|gb|CI338426.1|CI338426
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88551694|gb|CI481774.1|CI481774
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|86499222|gb|CI141855.1|CI141855
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88836444|gb|CI078341.1|CI078341
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|27577132|gb|CA999826.1|CA999826
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCCATTCTGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTC-ATTCTGG
EST: gi|88990278|gb|CI107704.1|CI107704
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTTGCGAAGAAATGGTCATTCTGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCT-GCGAAGAAATGGTCATTCTGG
EST: gi|86889159|gb|CI315770.1|CI315770
EST:     ACTGCCAAGACAGTTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: GCTGCCAAGACA-TTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88269396|gb|CI380694.1|CI380694
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|86833249|gb|CI334844.1|CI334844
EST:     AGCTGCCAAAACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|86887924|gb|CI298035.1|CI298035
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTG
EST: gi|89189417|gb|CI048956.1|CI048956
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88429370|gb|CI557102.1|CI557102
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88273250|gb|CI388706.1|CI388706
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|86528422|gb|CI168628.1|CI168628
EST:     AGCGGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|33811199|gb|CF331489.1|CF331489
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88462958|gb|CI522069.1|CI522069
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88366088|gb|CI548335.1|CI548335
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|163927753|gb|EG710533.1|EG710533
EST:     CTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: CTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88297500|gb|CI550563.1|CI550563
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88448925|gb|CI557997.1|CI557997
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88518606|gb|CI446260.1|CI446260
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88268800|gb|CI377704.1|CI377704
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88482240|gb|CI419511.1|CI419511
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88469935|gb|CI407206.1|CI407206
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88991748|gb|CI034886.1|CI034886
EST:     CCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: CCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|86847262|gb|CI285286.1|CI285286
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|86593850|gb|CI260079.1|CI260079
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|89191144|gb|CI392997.1|CI392997
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88223382|gb|CI223231.1|CI223231
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88431904|gb|CI560149.1|CI560149
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|86428070|gb|CI073167.1|CI073167
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|15856943|gb|BI809755.1|BI809755
EST:     AGCTGCC-AGACATTGTGTACCCCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCT-GG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|29616050|gb|CB621062.1|CB621062
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|12404673|gb|AU166274.1|AU166274
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|89197069|gb|CI021909.1|CI021909
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|89198536|gb|CI016621.1|CI016621
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88439067|gb|CI551918.1|CI551918
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88383797|gb|CI545948.1|CI545948
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|86528432|gb|CI168638.1|CI168638
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCGTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88262750|gb|CI366524.1|CI366524
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|87009350|gb|CI313823.1|CI313823
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88553620|gb|CI483744.1|CI483744
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|89195522|gb|CI051635.1|CI051635
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88906375|gb|CI375447.1|CI375447
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|29622778|gb|CB627789.1|CB627789
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88486216|gb|CI423487.1|CI423487
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88443099|gb|CI546671.1|CI546671
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|88995830|gb|CI037159.1|CI037159
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
EST: gi|86841149|gb|CI342905.1|CI342905
EST:     AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAG                         GAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG
genomic: AGCTGCCAAGACATTGTGTACACCATTTGAACAGCCAGATCTCCCAGAAGgtatgctttg ... caaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcttccatgcacttgtaactaaccttttctgatgcggtgcaccaaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGGGCCGCAGCTATTGATCTGTAACGGATCTCGGTTGTGATCATTCATTCCT
                                              aaaattca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgctttgcaggcaatagctaaaatgccacaaatagcctgggttcacaatctcttttgctcggtcttttactgcatttcttgcaacgtattcttccatgcacttgtaactaaccttttctgatgcggtgcaccaaaattcagGAACCACATGCTTTGCTTCTGGAAAGCCTGCGAAGAAATGGTCATTCTGGGGCCGCAGCTATTGATCTGTAACGGATCTCGGTTGTGATCATTCATTCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT