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gtaatccttttctgtacagagtctggaaattgtggttttctggagctgtaatcaatctaattattctgaacctaactttttatatatgtctagCATTGTTTTTCAGGTATCTAAACTATGCACAGTACTTCAGAAAGCAATTCGAGAAGTACTTGGATCAACTGGCTGGGATGTTCTTGTTCCTGGAGTGGCC
species | Oryza sativa |
transcript | LOC_Os12g20150.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATACCAGATAACAGTGTGAGAACTTACACAGAGGCAGAAATTCGTGCTGG CATTGTTTTTCAGGTATCTAAACTATGCACAGTACTTCAGAAAGCAATTCGEST: gi|29666723|gb|CB662998.1|CB662998
genomic: ATACCAGATAACAGTGTGAGAACTTACACAGAGGCAGAAATTCGTGCTGGgtaatccttt ... atatgtctagCATTGTTTTTCAGGTATCTAAACTATGCACAGTACTTCAGAAAGCAATTCG
EST: ATACCAGATAACAGTGTGAGAACTTACACAGAGGCAGAAATTCGTGCTGG CATTGTTTTTCAGGTATCTAAACTATGCACAGTACTTCAGAAAGCAATTCGEST: gi|58030277|gb|CX727820.1|CX727820
genomic: ATACCAGATAACAGTGTGAGAACTTACACAGAGGCAGAAATTCGTGCTGGgtaatccttt ... atatgtctagCATTGTTTTTCAGGTATCTAAACTATGCACAGTACTTCAGAAAGCAATTCG
EST: ATA--AGATAACAGTGTGAGAACTTACACAGAGGCAGAAATTCGTGCTGG CATTGTTTTTCAGGTATCTAAACTATGCACAGTAEST: gi|29613434|gb|CB618447.1|CB618447
genomic: ATACCAGATAACAGTGTGAGAACTTACACAGAGGCAGAAATTCGTGCTGGgtaatccttt ... atatgtctagCATTGTTTTTCAGGTATCTAAACTATGCACAGTA
EST: ATA--AGATAACAGTGTGAGAACTTACACAGAGGCAGAAATTCGTGCTGG CATTGTTTTTCAGGTATCTAAACTATGCACAGTACTTCAGAAAGCAATEST: gi|58668368|gb|CK057054.1|CK057054
genomic: ATACCAGATAACAGTGTGAGAACTTACACAGAGGCAGAAATTCGTGCTGGgtaatccttt ... atatgtctagCATTGTTTTTCAGGTATCTAAACTATGCACAGTACTTCAGAAAGCAAT
EST: ATACCAGATAACAGTGTGAGAACTTACACAGAGGCAGAAATTCGTGCTGG CATTGTTTTTCAGGTATCTAAACTATGCACAGTACTTCAGAAAGCAATTCGEST: gi|29629544|gb|CB634553.1|CB634553
genomic: ATACCAGATAACAGTGTGAGAACTTACACAGAGGCAGAAATTCGTGCTGGgtaatccttt ... atatgtctagCATTGTTTTTCAGGTATCTAAACTATGCACAGTACTTCAGAAAGCAATTCG
EST: ATACCAGATAACAGTGTGAGAACTTACACAGAGGCAGAAATTCGTGCTGG CATTGTTTTTCAAGTATCTAAACTATGCACAGTACTTCAGAAAGCAATTCGEST: gi|11442555|gb|BF430458.1|BF430458
genomic: ATACCAGATAACAGTGTGAGAACTTACACAGAGGCAGAAATTCGTGCTGGgtaatccttt ... atatgtctagCATTGTTTTTCAGGTATCTAAACTATGCACAGTACTTCAGAAAGCAATTCG
EST: ATACCAGATAACAGTGTGAGAACTTACACAGAGGCAGAAATTCGTGCTGG CATTGTTTTTCAGGTATCTAAACTATGCACAGTACTTCAGAAAGCAATTCG
genomic: ATACCAGATAACAGTGTGAGAACTTACACAGAGGCAGAAATTCGTGCTGGgtaatccttt ... atatgtctagCATTGTTTTTCAGGTATCTAAACTATGCACAGTACTTCAGAAAGCAATTCG
tctggagctgtaatcaatctaattattctgaacctaactttttatatatgtctagCATTGTTTTTCAGGTATCTAAACTATGCACAGTACTTCAGAAAGCAATTCGAGAAGTACTTGGATCAACTGGCTGGGATGTTCTTGTTCCTGGAGTGGCC
acctaac putative branch site (score: 2)
taatcaatctaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatccttttctgtacagagtctggaaattgtggttttctggagctgtaatcaatctaattattctgaacctaactttttatatatgtctagCATTGTTTTTCAGGTATCTAAACTATGCACAGTACTTCAGAAAGCAATTCGAGAAGTACTTGGATCAACTGGCTGGGATGTTCTTGTTCCTGGAGTGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT