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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgaagaactgcatacagtaataatttttgaaagtctttagaaatgttgggcacatctgattagattgttgtttcaccatatagGTAAGCCAATATTTGACTGAAGGGCTTGACCATGCTAGAGAGAGTTTAAATCATGCAGCAACTCAACGGGATAGATATGTCATTGGAACAAGTGTTAGTA

Basic information

species Oryza sativa
transcript LOC_Os12g13590.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g13590.1 (Oryza sativa), 3'ss of exon 15
lower sequence: GRMZM5G823484_T01 (Zea mays), 3'ss of exon 1
gtgagtgaagaactgcatacagtaataatttttgaaagtctttagaaatgttgggcacatctgattagattgttgtttcaccatatagGTAAGCCAATATTTGACTGAAGGGCTTGACCATGCTAGAGAGAGTTTAAATCATGCAGCAACTCAACGGGATAGATATGTCATTGGAACAAGTGTTAGTA
|| ||| | ||||  |||  |   |||||   |  || |       ||||    ||| |  |||  |  || |||||        ||||| |||||||| || |||||||||||||||| ||||||||||||||||||| | || ||| ||   ||||||||||||||||| || |||||||||||||
gtaagtaaggaaccacatg-atggataata--tagaaatt------aatgccttgcaga--tgacgaagtt-ttgtt-------gtagGTGAGCCAATACTTAACTGAAGGGCTTGACCGTGCTAGAGAGAGTTTAAATGAGGCCGCAGCTTTGCGGGATAGATATGTCATCGGGACAAGTGTTAGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29669745|gb|CB666020.1|CB666020
EST:     CTACTGTTGCAGCTAATGTGAGATCCATATTTGCATGCTTGCTTGATCAA                         GTAAGCCAATATTTGACTGAAGGGCTTGACCATGCTAGAGAGAGTTTAAAT
genomic: CTACTGTTGCAGCTAATGTGAGATCCATATTTGCATGCTTGCTTGATCAAgtgagtgaag ... caccatatagGTAAGCCAATATTTGACTGAAGGGCTTGACCATGCTAGAGAGAGTTTAAAT
EST: gi|58677785|gb|CK066472.1|CK066472
EST:     CTACTGTTGCAGCTAATGTGAGATCCATATTTGCATGCTTGCTTGATCAA                         GTAAGCCAATATTTGACTGAAGGGCTTGACCATGCTAGAGAGAGTTTAAAT
genomic: CTACTGTTGCAGCTAATGTGAGATCCATATTTGCATGCTTGCTTGATCAAgtgagtgaag ... caccatatagGTAAGCCAATATTTGACTGAAGGGCTTGACCATGCTAGAGAGAGTTTAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaagtctttagaaatgttgggcacatctgattagattgttgtttcaccatatagGTAAGCCAATATTTGACTGAAGGGCTTGACCATGCTAGAGAGAGTTTAAATCATGCAGCAACTCAACGGGATAGATATGTCATTGGAACAAGTGTTAGTA
                         atctgat  putative branch site (score: 4)
                                       ttgtttc  putative PPT
       tttagaaat  TA-rich tract