1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtttggtttctcattcttcgctctcttgctattctgaaatatatactttaacactgtttttgttttttgttctgtagGAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAATAAGCTGCAACATTCTGGTGATGACAGCCAGAAAAAAGGAAACTAATTGA
species | Oryza sativa |
transcript | LOC_Os12g13170.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGATCAGAAAGGAGTATGATGAGCTTCTATCAAAGAATAGCTCATTAAAG GAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAATEST: gi|86841957|gb|CI338364.1|CI338364
genomic: GGATCAGAAAGGAGTATGATGAGCTTCTATCAAAGAATAGCTCATTAAAGgtttggtttc ... tgttctgtagGAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAAT
EST: GTATGATGAGCTTCTATCAAAGAATAGCTCATTAAAG GAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAATEST: gi|29626016|gb|CB631027.1|CB631027
genomic: GTATGATGAGCTTCTATCAAAGAATAGCTCATTAAAGgtttggtttc ... tgttctgtagGAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAAT
EST: GGATCAGAAAGGAGTATGATGAGCTTCTATCAAAGAATAGCTCATTAAAG GAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAATEST: gi|29659468|gb|CB655743.1|CB655743
genomic: GGATCAGAAAGGAGTATGATGAGCTTCTATCAAAGAATAGCTCATTAAAGgtttggtttc ... tgttctgtagGAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAAT
EST: GGATCAGAAAGGAGTATGATGAGCTTCTATCAAAGAATAGCTCATTAAAG GAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAATEST: gi|88548426|gb|CI476797.1|CI476797
genomic: GGATCAGAAAGGAGTATGATGAGCTTCTATCAAAGAATAGCTCATTAAAGgtttggtttc ... tgttctgtagGAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAAT
EST: GAGCTTCTATCAAAGAATAGCTCATTAAAG GAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAATEST: gi|86524936|gb|CI165142.1|CI165142
genomic: GAGCTTCTATCAAAGAATAGCTCATTAAAGgtttggtttc ... tgttctgtagGAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAAT
EST: TGAGCTTCTATCAAAGAATAGCTCATTAAAG GAAAAACTTGAGGACAAACAACACGTAACTGATGAGGCAGGAGTTGACAATEST: gi|88538158|gb|CI467164.1|CI467164
genomic: TGAGCTTCTATCAAAGAATAGCTCATTAAAGgtttggtttc ... tgttctgtagGAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAAT
EST: TATCAAAGAATAGCTCATTAAAG GAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAATEST: gi|89193584|gb|CI116217.1|CI116217
genomic: TATCAAAGAATAGCTCATTAAAGgtttggtttc ... tgttctgtagGAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAAT
EST: GGATCAGAAAGGAGTATGATGAGCTTCTATCAAAGAATAGCTCATTAAAG GAAAAACTTGAGGACAAACAACACCAAACTGATGAGGCAGGAGTTGACAATEST: gi|25804027|gb|CA759988.1|CA759988
genomic: GGATCAGAAAGGAGTATGATGAGCTTCTATCAAAGAATAGCTCATTAAAGgtttggtttc ... tgttctgtagGAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAAT
EST: GGATCAGAAAGGAGTATGATGAGCTTCTATCAAAGAATAGCTCATTAAAG GAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAATEST: gi|29676440|gb|CB672715.1|CB672715
genomic: GGATCAGAAAGGAGTATGATGAGCTTCTATCAAAGAATAGCTCATTAAAGgtttggtttc ... tgttctgtagGAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAAT
EST: GGATCAGAAAGGAGTATGATGAGCTTCTATCAAAGAATAGCTCATTAAAG GAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAAT
genomic: GGATCAGAAAGGAGTATGATGAGCTTCTATCAAAGAATAGCTCATTAAAGgtttggtttc ... tgttctgtagGAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAAT
ctcttgctattctgaaatatatactttaacactgtttttgttttttgttctgtagGAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAATAAGCTGCAACATTCTGGTGATGACAGCCAGAAAAAAGGAAACTAATTGA
ctttaac putative branch site (score: 7)
tttttgttttttgttc putative PPT
tattctgaaatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggtttctcattcttcgctctcttgctattctgaaatatatactttaacactgtttttgttttttgttctgtagGAAAAACTTGAGGACAAACAACACAAAACTGATGAGGCAGGAGTTGACAATAAGCTGCAACATTCTGGTGATGACAGCCAGAAAAAAGGAAACTAATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA