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...ttctataaaagtctaaaagaataataggacagcagctgtagtgctatttatctggacgcatccatcatatatttatagctggagccttatttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAACCATCTGAAAGCCAATTTTCAGCTTTCTGATTTACAAGGACTTTGAAG
species | Oryza sativa |
transcript | LOC_Os12g05680.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|86496759|gb|CI139392.1|CI139392
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|87040460|gb|CI195082.1|CI195082
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTTAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|87041632|gb|CI196254.1|CI196254
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|89186512|gb|CI048184.1|CI048184
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|88275396|gb|CI395247.1|CI395247
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|88227490|gb|CI226970.1|CI226970
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|88968885|gb|CI098962.1|CI098962
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|88956467|gb|CI092718.1|CI092718
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|89187104|gb|CI047171.1|CI047171
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|88907985|gb|CI090581.1|CI090581
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|88903598|gb|CI089136.1|CI089136
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|88837943|gb|CI371521.1|CI371521
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATT-GTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|88228663|gb|CI228143.1|CI228143
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|87041136|gb|CI195758.1|CI195758
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|29641186|gb|CB646193.1|CB646193
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|88838183|gb|CI372751.1|CI372751
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|87041108|gb|CI195730.1|CI195730
genomic: CTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|86493961|gb|CI136594.1|CI136594
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|87040970|gb|CI195592.1|CI195592
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTCAGCTCCCTGTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAEST: gi|87040449|gb|CI195071.1|CI195071
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
EST: CATAATCGCCTCCGTGCCCTTAGCTCCCTCTGGGCTTCTCGTCCCCGAGA GATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
genomic: CATAATCGCCTCCGTGCCCTCAGCTCCCTCTGGGCTTCTCGTCCCCGAGAgtaagcacca ... ttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACA
atttatctggacgcatccatcatatatttatagctggagccttatttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAACCATCTGAAAGCCAATTTTCAGCTTTCTGATTTACAAGGACTTTGAAG
ccttattt CT-rich tract
atcatatatttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctataaaagtctaaaagaataataggacagcagctgtagtgctatttatctggacgcatccatcatatatttatagctggagccttatttgcctgtagGATATTGGTGGCAGATGAAGGCAACTGTGGAGAGCTAAGCATAGCAGCACAACCATCTGAAAGCCAATTTTCAGCTTTCTGATTTACAAGGACTTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - aaaagaa
- - - - - - - - - - - - - - - -gcagctg
- - - - - - - - - - - - - - - - - - - tagtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggagc