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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatctaattatttaaccaactttcttcttttctctgactacttggtccattttaaatagatcttattgattttagGAAAGTGGAAGGGCAGGGAGAGATGGACTACCTTCAGAATGTATTCTGTATTATCGACCTGGTGATGTTCCACGCCAA

Basic information

species Oryza sativa
transcript LOC_Os11g48090.3
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29682976|gb|CB679251.1|CB679251
EST:     GGTTTGTGATTCACCACAGCCTTAGTAAATCTATGGAAACATACTACCAG                         GAAAGTGGAAGGGCAGGGAGAGATGGACTACCTTCAGAATGTATTCTGTAT
genomic: GGTTTGTGATTCACCACAGCCTTAGTAAATCTATGGAAACATACTACCAGgtacatctaa ... ttgattttagGAAAGTGGAAGGGCAGGGAGAGATGGACTACCTTCAGAATGTATTCTGTAT
EST: gi|58596568|gb|CK007096.1|CK007096
EST:     GGTTTGTGATTCACCACAGCCTTAGTAAATCTATGGAAACATACTACCAG                         GAAAGTGGAAGGGCAGGGAGAGATGGACTACCTTCAGAATGTATTCTGTAT
genomic: GGTTTGTGATTCACCACAGCCTTAGTAAATCTATGGAAACATACTACCAGgtacatctaa ... ttgattttagGAAAGTGGAAGGGCAGGGAGAGATGGACTACCTTCAGAATGTATTCTGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttcttttctctgactacttggtccattttaaatagatcttattgattttagGAAAGTGGAAGGGCAGGGAGAGATGGACTACCTTCAGAATGTATTCTGTATTATCGACCTGGTGATGTTCCACGCCAA
                                           tattgat  putative branch site (score: 3)
                                        tcttatt  CT-rich tract
                            attttaaatagatctt  TA-rich tract