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gtaagttcagattccactaacatccccctaaaatgaactgagtttgaaggattgggagctttatttatgttagggtcttagggactaagaagtagagagatttgtctgctgatgaacaacataagctgatattggcagaaaaatgacgtttgtttgctgctttgatcctcatccagGACTGGAACAAAGATCTCCTGTACTAGATGCGGGTCTTCTTGGGCTCCTCAGATGGTTGAGAACGCTTGCTTAGGATGATACGGACAAAGATTTGGTTGA
species | Oryza sativa |
transcript | LOC_Os11g36440.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGTGGCATTTTCAGGGATCATGTGTGCTCATCGAGTTGCAGCTGATATTG GACTGGAACAAAGATCTCCTGTACTAGATGCGGGTCTTCTTGGGCTCCTCAEST: gi|218485150|gb|FG948391.1|FG948391
genomic: TGTGGCATTTTCAGGGATCATGTGTGCTCATCGAGTTGCAGCTGATATTGgtaagttcag ... cctcatccagGACTGGAACAAAGATCTCCTGTACTAGATGCGGGTCTTCTTGGGCTCCTCA
EST: TGTGGCATTTTCAGGGATCATGTGTGCTCATCGAGTTGCAGCTGATATTG GACTGGAACAAAGATCTCCTGTACTAGATGCCGGTCTTCTTGGGCTCCTCAEST: gi|66922069|gb|CX108917.1|CX108917
genomic: TGTGGCATTTTCAGGGATCATGTGTGCTCATCGAGTTGCAGCTGATATTGgtaagttcag ... cctcatccagGACTGGAACAAAGATCTCCTGTACTAGATGCGGGTCTTCTTGGGCTCCTCA
EST: TGTGGCATTTTCAGGGATCATGTGTGCTCATCGAGTTGCAGCTGATATTG GACTGGAACAAAGATCTCCTGTACTAGATGCGGGTCTTCTTGGGCTCCTCEST: gi|89186057|gb|CI047926.1|CI047926
genomic: TGTGGCATTTTCAGGGATCATGTGTGCTCATCGAGTTGCAGCTGATATTGgtaagttcag ... cctcatccagGACTGGAACAAAGATCTCCTGTACTAGATGCGGGTCTTCTTGGGCTCCTC
EST: TGTGGCATTTTCAGGGATCATGTGTGCTCATCGAGTTGCAGCTGATATTG GACTGGAACAAAGATCTCCTGTACTAGATGCGGGTCTTCTTGGGCTCCTCAEST: gi|89184082|gb|CI046647.1|CI046647
genomic: TGTGGCATTTTCAGGGATCATGTGTGCTCATCGAGTTGCAGCTGATATTGgtaagttcag ... cctcatccagGACTGGAACAAAGATCTCCTGTACTAGATGCGGGTCTTCTTGGGCTCCTCA
EST: TGTGGCATTTTCAGGGATCATGTGTGCTCATCGAGTTGCAGCTGATATTG GACTGGAACAAAGATCTCCTGTACTAGATGCGGGTCTTCTTGGGCTCCTCA
genomic: TGTGGCATTTTCAGGGATCATGTGTGCTCATCGAGTTGCAGCTGATATTGgtaagttcag ... cctcatccagGACTGGAACAAAGATCTCCTGTACTAGATGCGGGTCTTCTTGGGCTCCTCA
taagctgatattggcagaaaaatgacgtttgtttgctgctttgatcctcatccagGACTGGAACAAAGATCTCCTGTACTAGATGCGGGTCTTCTTGGGCTCCTCAGATGGTTGAGAACGCTTGCTTAGGATGATACGGACAAAGATTTGGTTGA
tcctcatcc CT-rich tract
agaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcagattccactaacatccccctaaaatgaactgagtttgaaggattgggagctttatttatgttagggtcttagggactaagaagtagagagatttgtctgctgatgaacaacataagctgatattggcagaaaaatgacgtttgtttgctgctttgatcctcatccagGACTGGAACAAAGATCTCCTGTACTAGATGCGGGTCTTCTTGGGCTCCTCAGATGGTTGAGAACGCTTGCTTAGGATGATACGGACAAAGATTTGGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG