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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacatgcaagttgtcctgttgtgaaaaacgatactattttacaaacagtactgttatggctacaatatgtgaaattttgcaccatattctcatgctttatattataatttttttctagAACCTGGACAAGAGCTGTTTGATGCCTTTACGGAAATCTTACTGCCATTCTCTTAACTTGTTAATTCGACGGGAG

Basic information

species Oryza sativa
transcript LOC_Os11g17600.3
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g17600.1 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G060949_T01 (Zea mays), 3'ss of exon 2
gttacatgcaagttgtcctgttgtgaaaaacgatactattttacaaacagtactgttatggctacaatatgtgaaattttgcaccatattctcatgctttatattataattt-ttttctagAACCTGGACAAGAGCTGTTTGATGCCTTTACGGAAATCTTACTGCCATTCTCTTAACTTGTTAATTCGACGGGAG
|||   ||||   |  |  | ||||||      | |    | | ||  || |  |       |  |    || ||| ||||  |   ||||| ||||  | | || || | | ||||  |||   |||||||||| ||| |||||||||| |||||| ||||||||||||| || ||| || |||||||||| |||
gtt-tgtgcataataactcggtgtgaattttttttcgtactgataacgaggagcgagtgacttttagctagtaaaactttgtgc---attctaatgccctct-ttgtactctgttttgaagAGTTTGGACAAGAGTTGTATGATGCCTTTGCGGAAAGCTTACTGCCATTCGCTGAACATGATAATTCGACGTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatgtgaaattttgcaccatattctcatgctttatattataatttttttctagAACCTGGACAAGAGCTGTTTGATGCCTTTACGGAAATCTTACTGCCATTCTCTTAACTTGTTAATTCGACGGGAG
                                            tttttttct  CT-rich tract
                    atattctcatgcttta  TA-rich tract