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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatactcctatgcatttttatgaaccatgttgcagccattactacagtactttatataagtgaagtaaacaaatcggtgttgtgaattactagcacatacaagaaatagaaacttgtgttatgttgatttgatcataaaatggaaattcaatgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCATGTTGACCTTCAAACCTTTCTTGGCGGTTCCTCAACAATACAAATAGAA

Basic information

species Oryza sativa
transcript LOC_Os11g04030.3
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g04030.4 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM5G877788_T04 (Zea mays), 3'ss of exon 13
gtaaatactcctatgcatttttatgaaccatgttgcagccattactacagtactttatataagtgaagtaaacaaatcggtgttgtgaattactagcacatacaagaaatagaaacttgtgttatgttgatttgatcataaaatggaaattcaatgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCATGTTGACCTTCAAACCTTTCTTGGCGGTTCCTCAACAATACAAATAGAA
                    | || || ||   |  |   ||    |||  ||  | |    |  |    | ||  | | || ||   ||    |    |    |||||  ||   ||||| |   |  |        | | |||   || || ||   || |||||| ||||||||||||||  | ||||| ||||| |||||||| || ||| || | |||||||| |||||| | |||||||| || || |||||| ||  
-------------------gtaattaaacaacctatatatatatacaca-cacgctgttactgcaataagagcatgtagatgatgcagatctgaatgggaggttagaaaggga---ttgtgattaatctaacccccattgatatgtgtatgca-tgc-atgtagGTGACCAGATGGTGTTTCTGCTCCTGAATCTGACGGAGGTCATCGGGCTCGTGCTCACCTTCAAGCCTTTCCTCGCGGTTCCCCAGCAGTACAAACAGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86431076|gb|CI083499.1|CI083499
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88532104|gb|CI461565.1|CI461565
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88520442|gb|CI448096.1|CI448096
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88283253|gb|CI404699.1|CI404699
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88518921|gb|CI446575.1|CI446575
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88507466|gb|CI434972.1|CI434972
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88848658|gb|CI087180.1|CI087180
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88219437|gb|CI218997.1|CI218997
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88217007|gb|CI216711.1|CI216711
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88841567|gb|CI080823.1|CI080823
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88488062|gb|CI425333.1|CI425333
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|29678071|gb|CB674346.1|CB674346
EST:     ANNNNNNNGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|86260630|gb|CI066503.1|CI066503
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88523558|gb|CI451395.1|CI451395
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|86494925|gb|CI137558.1|CI137558
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|29680055|gb|CB676330.1|CB676330
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|86870704|gb|CI323580.1|CI323580
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAAGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88531586|gb|CI458682.1|CI458682
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|89186840|gb|CI052253.1|CI052253
EST:     ATTCTCTTGGGCACCAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88253816|gb|CI352442.1|CI352442
EST:     ATTCTCTTGGGCACAAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCAC-AAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88842694|gb|CI081950.1|CI081950
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|87006928|gb|CI275236.1|CI275236
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|29644402|gb|CB649409.1|CB649409
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88484549|gb|CI421820.1|CI421820
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88414248|gb|CI533618.1|CI533618
EST:     ATTCTCTTGGG--CAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88537107|gb|CI464921.1|CI464921
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|87025643|gb|CI250137.1|CI250137
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88486927|gb|CI424198.1|CI424198
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|29679866|gb|CB676141.1|CB676141
EST:     ATTTTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88537059|gb|CI464870.1|CI464870
EST:     ATTCTCTGGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|88841121|gb|CI080575.1|CI080575
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
EST: gi|89193059|gb|CI050357.1|CI050357
EST:     ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAG                         GTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA
genomic: ATTCTCTTGGGCACAAAAGCGACAGCATGCAGCATTTTTTCCAGgtaaatactc ... tgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaaacttgtgttatgttgatttgatcataaaatggaaattcaatgttgtgcagGTGATCAGATGGTGTTTCTTTTACTGAACCTGACTGAGGTCATTGGACTCATGTTGACCTTCAAACCTTTCTTGGCGGTTCCTCAACAATACAAATAGAA
                    atttgatcataaaat  TA-rich tract