1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtactgttaccacacttgttttatgtttacttcctctcattttcatatcattgtgtgcaccattccttgtgtaattaaaatacatgtttgtggacctcgagatgtatttcaaaagtacagacactgttactgagtgaaatcataaatgtgatgttgattgttttatgtgcagGGCCAGAAAGACTTGAAAGAATTGCACTGGCACCCACAGATACCTAGTATGATCATATCTACGGCAGCTGATGGATTCAATATGTTGATGCCCAGCAACA
species | Oryza sativa |
transcript | LOC_Os11g03990.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGGCTGATGCCCCTGAAGATTTACCCCCACAACTTCTCTTTGTTCATCAG GGCCAGAAAGACTTGAAAGAATTGCACTGGCACCCACAGATACCTAGTATGEST: gi|88840647|gb|CI080101.1|CI080101
genomic: AGGCTGATGCCCCTGAAGATTTACCCCCACAACTTCTCTTTGTTCATCAGgtactgttac ... ttatgtgcagGGCCAGAAAGACTTGAAAGAATTGCACTGGCACCCACAGATACCTAGTATG
EST: AGGCTGATGCCCCTGAAGATTTACCCCCACAACTTCTCTTTGTTCATCAG GGCCAGAAAGACTTGAAAGAATTGCACTGGCACCCACAGATACCTAGTATGEST: gi|86863395|gb|CI344668.1|CI344668
genomic: AGGCTGATGCCCCTGAAGATTTACCCCCACAACTTCTCTTTGTTCATCAGgtactgttac ... ttatgtgcagGGCCAGAAAGACTTGAAAGAATTGCACTGGCACCCACAGATACCTAGTATG
EST: AGGCTGATGCCCCTGAAGATTTACCCCCACAACTTCTCTTTGTTCATCAG GGCCAGAAAGACTTGAAAGAATTGCACTGGCACCCACAGATACCTAGTATGEST: gi|88969906|gb|CI383408.1|CI383408
genomic: AGGCTGATGCCCCTGAAGATTTACCCCCACAACTTCTCTTTGTTCATCAGgtactgttac ... ttatgtgcagGGCCAGAAAGACTTGAAAGAATTGCACTGGCACCCACAGATACCTAGTATG
EST: AGGCTGATGCCCCTGAAGATTTACCCCCACAACTTCTCTTTGTTCATCAG GGCCAGAAAGACTTGAAAGAATTGCACTGGCACCCACAGATACCTAGTATG
genomic: AGGCTGATGCCCCTGAAGATTTACCCCCACAACTTCTCTTTGTTCATCAGgtactgttac ... ttatgtgcagGGCCAGAAAGACTTGAAAGAATTGCACTGGCACCCACAGATACCTAGTATG
cagacactgttactgagtgaaatcataaatgtgatgttgattgttttatgtgcagGGCCAGAAAGACTTGAAAGAATTGCACTGGCACCCACAGATACCTAGTATGATCATATCTACGGCAGCTGATGGATTCAATATGTTGATGCCCAGCAACA
tgttgat putative branch site (score: 12)
ttgtttt CT-rich tract
aaatcataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgttaccacacttgttttatgtttacttcctctcattttcatatcattgtgtgcaccattccttgtgtaattaaaatacatgtttgtggacctcgagatgtatttcaaaagtacagacactgttactgagtgaaatcataaatgtgatgttgattgttttatgtgcagGGCCAGAAAGACTTGAAAGAATTGCACTGGCACCCACAGATACCTAGTATGATCATATCTACGGCAGCTGATGGATTCAATATGTTGATGCCCAGCAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA