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...actgtctttgcctcgtctagtattaagatatatcaagtctctagtttgagttgtgagttgtgaccaagcccataatatgtttgtattttgtgtttaccagGTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG
species | Oryza sativa |
transcript | LOC_Os10g36760.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAG GTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGCEST: gi|89173586|gb|CI041479.1|CI041479
genomic: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAGgtacatccaa ... tgtttaccagGTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGC
EST: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAG GTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGCEST: gi|89181004|gb|CI045087.1|CI045087
genomic: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAGgtacatccaa ... tgtttaccagGTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGC
EST: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAG GTGACTCGTCTAATTGTTCATCTCCAAAAGCTGTGAACAAAGTAAGAAAGCEST: gi|3768110|gb|AU032137.1|AU032137
genomic: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAGgtacatccaa ... tgtttaccagGTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGC
EST: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAG GTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGCEST: gi|29667886|gb|CB664161.1|CB664161
genomic: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAGgtacatccaa ... tgtttaccagGTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGC
EST: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAG GTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGCEST: gi|87030148|gb|CI111844.1|CI111844
genomic: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAGgtacatccaa ... tgtttaccagGTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGC
EST: CTCAAGCTCCTTCACATATTGAAG GTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGCEST: gi|89174046|gb|CI041939.1|CI041939
genomic: CTCAAGCTCCTTCACATATTGAAGgtacatccaa ... tgtttaccagGTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGC
EST: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAG GTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGCEST: gi|87031114|gb|CI259694.1|CI259694
genomic: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAGgtacatccaa ... tgtttaccagGTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGC
EST: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAG GTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGCEST: gi|86897244|gb|CI294318.1|CI294318
genomic: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAGgtacatccaa ... tgtttaccagGTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGC
EST: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAG GTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAEST: gi|18386498|gb|BM419696.1|BM419696
genomic: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAGgtacatccaa ... tgtttaccagGTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAA
EST: TGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAG GTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAGACCAAGTAAGAAAGEST: gi|29678500|gb|CB674775.1|CB674775
genomic: TGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAGgtacatccaa ... tgtttaccagGTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGA-ACAAAGTAAGAAAG
EST: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAG GTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGCEST: gi|86260495|gb|CI066368.1|CI066368
genomic: ACATTGCAGTGATCTATCTGGATGCCCTCAAGCTCCTTCACATATTGAAGgtacatccaa ... tgtttaccagGTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGC
EST: CTCCTTCACATATTGAAG GTGACTCGTCTAATTGTTTATCTCCAGAAGCTGTGAACAAAGTAAGAAAGCEST: gi|88976203|gb|CI024420.1|CI024420
genomic: CTCCTTCACATATTGAAGgtacatccaa ... tgtttaccagGTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGC
EST: AAGCTCCTTCACATATTGAAG GTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGC
genomic: AAGCTCCTTCACATATTGAAGgtacatccaa ... tgtttaccagGTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGC
ttgagttgtgagttgtgaccaagcccataatatgtttgtattttgtgtttaccagGTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG
ataatatgtttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgtctttgcctcgtctagtattaagatatatcaagtctctagtttgagttgtgagttgtgaccaagcccataatatgtttgtattttgtgtttaccagGTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - tgcctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt