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...agttatctgtagtttctgaatcaaaatttacacgcttgacagtctgtactaacaaaccttcccttcttttgttttttttttcttatgcacctggacttagCCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGACGCGGCCATTGCGGTGGTAGCAGAAATGGAGACAAATGGAATCAAGGTA
species | Oryza sativa |
transcript | LOC_Os10g32540.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTTATGACAATATTGCAAACAACGCATAGCCTTGGCTACAAATTTGGAAG CCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGAEST: gi|29638794|gb|CB643803.1|CB643803
genomic: TTTATGACAATATTGCAAACAACGCATAGCCTTGGCTACAAATTTGGAAGgtaaaacttt ... ctggacttagCCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGA
EST: TTTATGACAATATTGCAAACAACGCATAGCCTTGGCTACAAATTTGGAAG CCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGAEST: gi|88974294|gb|CI019967.1|CI019967
genomic: TTTATGACAATATTGCAAACAACGCATAGCCTTGGCTACAAATTTGGAAGgtaaaacttt ... ctggacttagCCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGA
EST: TTTATGACAATATTGCAAACAACGCATAGCCTTGGCTACAAATTTGGAAG CCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGAEST: gi|29643469|gb|CB648476.1|CB648476
genomic: TTTATGACAATATTGCAAACAACGCATAGCCTTGGCTACAAATTTGGAAGgtaaaacttt ... ctggacttagCCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGA
EST: TTTATGACAATATTGCAAACAACGCATAGCCTTGGCTACAAATTTGGAAG CCCTTTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGAEST: gi|58682349|gb|CK071036.1|CK071036
genomic: TTTATGACAATATTGCAAACAACGCATAGCCTTGGCTACAAATTTGGAAGgtaaaacttt ... ctggacttagCCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGA
EST: TTTATGACAATATTGCAAACAACGCATAGCCTTGGCTACAAATTTGGAAG CCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGAEST: gi|86495882|gb|CI138515.1|CI138515
genomic: TTTATGACAATATTGCAAACAACGCATAGCCTTGGCTACAAATTTGGAAGgtaaaacttt ... ctggacttagCCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGA
EST: TTTATGACAATATTGCAAACAACGCATAGCCTTGGCTACAAATTTGGAAG CCCTCTGTACGACGAGGCGATCTTGCTGTCCCTTGATCTGGAGGAGATCGAEST: gi|25806243|gb|CA762204.1|CA762204
genomic: TTTATGACAATATTGCAAACAACGCATAGCCTTGGCTACAAATTTGGAAGgtaaaacttt ... ctggacttagCCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGA
EST: TTTATGACAATATTGCAAACAACGCATAGCCTTGGCTACAAATTTGGAAG CCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGAEST: gi|58588897|gb|CF987205.1|CF987205
genomic: TTTATGACAATATTGCAAACAACGCATAGCCTTGGCTACAAATTTGGAAGgtaaaacttt ... ctggacttagCCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGA
EST: TTTATGACAATATTGCAAACAACGCATAGCCTTGGCTACAAGTTTGGAAG CCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGA
genomic: TTTATGACAATATTGCAAACAACGCATAGCCTTGGCTACAAATTTGGAAGgtaaaacttt ... ctggacttagCCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGA
gtactaacaaaccttcccttcttttgttttttttttcttatgcacctggacttagCCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGACGCGGCCATTGCGGTGGTAGCAGAAATGGAGACAAATGGAATCAAGGTA
tactaac putative branch site (score: 6)
ccttcccttcttttgt putative PPT
ttcttttgtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttatctgtagtttctgaatcaaaatttacacgcttgacagtctgtactaacaaaccttcccttcttttgttttttttttcttatgcacctggacttagCCCTCTGTACGACGAGGCGATCTTGCTGTGCCTTGATCTGGAGGAGATCGACGCGGCCATTGCGGTGGTAGCAGAAATGGAGACAAATGGAATCAAGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - -ctgaatc
- - - - - - - - - - - - - - - - - - - - - - - - -taacaaa