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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcacttttctctctctaatcagcattagatagattttttttttaagtctgtatgtcccaaaagctatatgaacttttgtgtaacacattttttcaactttcagATATTCCGGCGTGTGGCTGATTACTCGATGTGGAGCACTGCTAAAAGGTGGTTATGATATCAACAACTTTGTTCTTTGCATCGTCATTGTCATGCTCATG

Basic information

species Oryza sativa
transcript LOC_Os10g30610.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29637153|gb|CB642162.1|CB642162
EST:     TGCTATCCCAAATGGGCACTAGAGGCTCTCATTATTGCAGGAGCAAAAAA                         -TATTCCGGCGTGTGGCTGATTACTCGATGTGGAGCACTGCTAAAAGGTGG
genomic: TGCTATCCCAAATGGGCACTAGAGGCTCTCATTATTGCAGGAGCAAAAAAgttagcactt ... caactttcagATATTCCGGCGTGTGGCTGATTACTCGATGTGGAGCACTGCTAAAAGGTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatgtcccaaaagctatatgaacttttgtgtaacacattttttcaactttcagATATTCCGGCGTGTGGCTGATTACTCGATGTGGAGCACTGCTAAAAGGTGGTTATGATATCAACAACTTTGTTCTTTGCATCGTCATTGTCATGCTCATG
                             gtgtaac  putative branch site (score: 3)
                                       ttttttcaactttc  putative PPT
                                      attttttcaacttt  TA-rich tract