1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tactgtaatggcaatacacaaaggcatggaaagcttgcattgcataagaaacgttgtcacatcccattctttaactaactagacatggtgactgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACAGCGCGCAGAACCTCGCCGCCATGCTGAGCTTCTTCTCCGAGTTCACGC
species | Oryza sativa |
transcript | LOC_Os10g26140.3 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|88849149|gb|CI087671.1|CI087671
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|86502356|gb|CI144989.1|CI144989
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|89186084|gb|CI047953.1|CI047953
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|86477411|gb|CI120044.1|CI120044
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|94362431|gb|CI052426.1|CI052426
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|89192800|gb|CI050098.1|CI050098
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|86862123|gb|CI330695.1|CI330695
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: GAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|58687502|gb|CK076189.1|CK076189
genomic: GAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|86482162|gb|CI124795.1|CI124795
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|87013138|gb|CI281652.1|CI281652
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|86884727|gb|CI313106.1|CI313106
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: GCAAGGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|86827328|gb|CI270972.1|CI270972
genomic: GCAA-GACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|29621826|gb|CB626837.1|CB626837
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|87016317|gb|CI271728.1|CI271728
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|86832490|gb|CI344740.1|CI344740
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|86895290|gb|CI331224.1|CI331224
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|16578849|gb|BI812944.1|BI812944
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|88844852|gb|CI022206.1|CI022206
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: GCAAGACGGATACCACCTGGAGGCTCTTCCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|29634117|gb|CB639126.1|CB639126
genomic: GCAAGACGGATACCACCTGGAGGCTCTT-CGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|86478805|gb|CI121438.1|CI121438
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|86482103|gb|CI124736.1|CI124736
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|86868248|gb|CI331938.1|CI331938
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: ACGCTAG-AAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGGCTGTGGCCATAAAEST: gi|86431426|gb|CI085037.1|CI085037
genomic: ACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAA-GCTGTGGCCATAAA
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|88460014|gb|CI526870.1|CI526870
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|86840823|gb|CI335026.1|CI335026
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|88265009|gb|CI368783.1|CI368783
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: CGCTACGCTAGAAAATACAAG TTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|86437670|gb|CI119590.1|CI119590
genomic: CGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|286811|gb|D15618.1|D15618
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TTCAAGACGGATACCACCTGGAGGCTCTTNG-TACGNTAGAAAATACAAG GTAATAACTGTGCAGCEST: gi|87016228|gb|CI271639.1|CI271639
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|29630282|gb|CB635291.1|CB635291
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|29669543|gb|CB665818.1|CB665818
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|86481413|gb|CI124046.1|CI124046
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|88475975|gb|CI413246.1|CI413246
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|86895616|gb|CI315935.1|CI315935
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCTCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|89195851|gb|CI007270.1|CI007270
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACEST: gi|86437949|gb|CI119869.1|CI119869
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
EST: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAG GTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
genomic: TGCAAGACGGATACCACCTGGAGGCTCTTCGCTACGCTAGAAAATACAAGgtactctttt ... actgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAAC
aagaaacgttgtcacatcccattctttaactaactagacatggtgactgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACAGCGCGCAGAACCTCGCCGCCATGCTGAGCTTCTTCTCCGAGTTCACGC
aactaac putative branch site (score: 1)
ctgttcc putative PPT
attctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactgtaatggcaatacacaaaggcatggaaagcttgcattgcataagaaacgttgtcacatcccattctttaactaactagacatggtgactgttccagGTAATAACTGTGCAGCCTGTCCTGTTCTTGGAGAAAGCTGTGGCCATAAACAGCGCGCAGAACCTCGCCGCCATGCTGAGCTTCTTCTCCGAGTTCACGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- -tgtaatg
- - - - - - - - cacaaag
- - - - - - - - - - - -gcatgga
- - - - - - - - - - - - - - - - gcttgca
- - - - - - - - - - - - - - - - - - - -ttgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggtg