Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctatagcacatgccatttcaactttatgcaaaatttatttcttcaggtatctctatggaccagacaataagatttaagaacaatctaatttttctgcagGACCTCCTCAGCAATTAAGGTCTACCGTGAGGCAATTTCCACAGGACTATTACCCTCAAGTGATGTTTTGTCTCAAGTGTTGGGATGTTTAAGGTTTCCT

Basic information

species Oryza sativa
transcript LOC_Os10g10170.4
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g10170.4 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G018929_T02 (Zea mays), 3'ss of exon 7
tctatagcacatgccattt--caactttatgcaa-aatttatttcttcaggtatctctatggaccagacaataagatttaagaacaatctaatttttctgcagGACCTCCTCAGCAATTAAGGTCTACCGTGAGGCAATTTCCACAGGACTATTACCCTCAAGTGATGTTTTGTCTCAAGTGTTGGGATGTTTAAGGTTTCCT
 || | ||    ||| |||   ||  | || |    |   | || || |  | | |  |   ||   |||||    |||   |   || |   ||||||| ||||| ||||||||| ||| ||| || ||||||||| ||||  | || ||| ||||||||||||||||||| |||||||||||||||||| | ||| |||||
-ctgttgctgcggccttttattaatataatactgcgaccgagtttttta--tgtttaaaaaaactttacaatgttctttctaagtcatttgtattttctgtagGACTTCCTCAGCAGTTATGGTGTATCGTGAGGCAGTTTCAGCTGGGCTACTACCCTCAAGTGATGTTTTATCTCAAGTGTTGGGATGTCTGAGGCTTCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88405888|gb|CI591283.1|CI591283
EST:     AATATCGTTGTCACATTCAACTTAGGGAAAACACAGATTGAGAACAAATG                         GACCTCCTCAGCAATTAAGGTCTACCGTGAGGCAATTTCCACAGGACTATT
genomic: AATATCGTTGTCACATTCAACTTAGGGAAACCACAGATTGAGAACAAATGgtatgctcct ... ttttctgcagGACCTCCTCAGCAATTAAGGTCTACCGTGAGGCAATTTCCACAGGACTATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggtatctctatggaccagacaataagatttaagaacaatctaatttttctgcagGACCTCCTCAGCAATTAAGGTCTACCGTGAGGCAATTTCCACAGGACTATTACCCTCAAGTGATGTTTTGTCTCAAGTGTTGGGATGTTTAAGGTTTCCT
                                      atctaat  putative branch site (score: 3)
                                            tttttctgc  CT-rich tract
                     aataagatttaagaac  TA-rich tract