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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acacctttcttttacacgctctcagatttcttttactgccatgccccataagacatgaaatgactatggtagtgatgttcttgctcttcttgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA

Basic information

species Oryza sativa
transcript LOC_Os09g26880.3
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g26880.3 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G382159_T01 (Zea mays), 3'ss of exon 3
--acacctttcttttacac-gctctcagatttcttttactgccatgccccataagacatgaaatgactatggtagtgatgttcttgctcttcttgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA
    |  ||| ||  | |  | |||||  |||  |    | |  |||   |||     | |  || | ||   ||      | ||  |  ||||  | | |||||| ||||||||||| ||||| || || ||||| || || || || ||||||||||||||||||||||| |||||||||||||||||  |||||||||||
ttgaatatttattgcaaaaagttctcatcttttgtggggtcctttgcgttatatttttttat-tgccaata--agcctcactgtttgttctcttattatgcagGCCCCATGGTAGTGATTGTGGTATAGTGAATGTGAACATACCTACTAATGGTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAGCTGGTGGTGGA

upper sequence: LOC_Os09g26880.3 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G130440_T02 (Zea mays), 3'ss of exon 12
---acacctttcttttacacgctctcagatttcttttactgccatgccccataagacatgaaatgactatggtagtgatgttcttgctcttcttgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA
   |   |||  |   | |   |||||  |||  |    | |   |    |||     |||  || | ||   ||      | ||  |  ||||  | | |||||| ||||||||||| ||||| || || ||||| || || || || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
ttgaatacttattgcaaaaatttctcatcttttgtggggtccttcgagttatattttttgat-tgccaata--agcctcactgtttgttctcttattatgcagGCCCCATGGTAGTGATTGTGGTATAGTGAATGTGAACATACCTACTAATGGTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAACTGGTGGTGGA

upper sequence: LOC_Os09g26880.3 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM5G828253_T01 (Zea mays), 3'ss of exon 1
--acacctttcttttaca-cgctctcagatttcttttactgccatgccccataagacatgaaatgactatggtagtgatgttcttgctcttcttgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA
    |  ||| ||  | |  | ||||  || | || |   | | |  |   ||     |   ||  | |    ||      | ||  |  ||||  | | |||||| ||||||||||| ||||| || || ||||| || || || || ||||||||||||||||||||||| |||||||||||||||||  |||||||||||
ttgaatatttattgcaaaatgttctc--atcttttgtggggtcctttcggttatattttttgattgcca-ataagcctcactgtttgttctcttattatgcagGCCCCATGGTAGTGATTGTGGTATAGTGAATGTGAACATACCTACTAATGGTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAGCTGGTGGTGGA

upper sequence: LOC_Os09g26880.3 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G070514_T02 (Zea mays), 3'ss of exon 5
--acacctttcttttacac-gctctcagatttcttttactgccatgccccataagacatgaaatgactatggtagtgatgttcttgctcttcttgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA
    |  ||| ||  | |  | |||||  |||  |    | |  ||    |||     |||  || | ||   ||      | ||  |  | ||  | | |||||| ||||||||||| ||||| || || ||||| || || || || ||||||||||||||||||||||| |||||||||||||||||  |||||||||||
ttgaatatttattgcaaaaagttctcatcttttgtggggtcctttgggttatattttttgat-tgccaata--agcctcactgtttgttctgttattatgcagGCCCCATGGTAGTGATTGTGGTATAGTGAATGTGAACATACCTACTAATGGTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAGCTGGTGGTGGA

upper sequence: LOC_Os09g26880.3 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM5G820733_T01 (Zea mays), 3'ss of exon 4
--acacctttcttttacac-gctctcagatttcttttactgccatgccccataagacatgaaatgactatggtagtgatgttcttgctcttcttgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA
    |  ||| ||  | |  | |||||  |||  |    | |  ||    |||     |||  || | ||   |||     | ||  |  ||||  | | |||||| ||||||||||| ||||| || || ||||| || || || || ||||||||||||||||||||||| |||||||||||||||||  |||||||||||
ttgaatatttattgcaaaaagttctcatcttttgtggggtcctttgggttatattttttgat-tgccaata--agtctcactgtttgttctcttattatgcagGCCCCATGGTAGTGATTGTGGTATAGTGAATGTGAACATACCTACTAATGGTGCTGAAATTGGTGGAGCATTTGGTGGAGAAAAAGCAGCTGGTGGTGGA

upper sequence: LOC_Os09g26880.3 (Oryza sativa), 3'ss of exon 12
lower sequence: GLYMA15G19670.4 (Glycine max), 3'ss of exon 12
--------------------------------------------acacctttcttttacacgctctcagattt--cttttactgccatgccccataagacatgaa--atgactatggtagtgatgt-tcttgctcttct-----------tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA--------
                                            |    |||    ||||| ||     | ||  ||   ||| | ||      |  |   |||   ||   |     | |  | | | || ||  |             |   || |||||| |  |||||||| ||||| || || |||| ||| || || |||||||| ||||| |||||||| || |||||||||||||| || || ||||||||         
gtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcaggccacgagGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGCCGTGAGGC

upper sequence: LOC_Os09g26880.3 (Oryza sativa), 3'ss of exon 12
lower sequence: GLYMA15G19670.1 (Glycine max), 3'ss of exon 12
------------------------------------------------acacctttcttttacacgctctcagattt--cttttactgccatgccccataagacatgaa--atgactatggtagtgatgt-tcttgctcttct-----------tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA
                                                |    |||    ||||| ||     | ||  ||   ||| | ||      |  |   |||   ||   |     | |  | | | || ||  |             |   || |||||| |  |||||||| ||||| || || |||| ||| || || |||||||| ||||| |||||||| || |||||||||||||| || || |||||||| 
gtaagtacttacaaacttatttttgtcctatcctttcgatctctgctgatgagtttggcctacacacttcagtacttgactaacactcctataagatgtttgtggtgatttatagttgcataaatagtatattttacttgttcatgggtgtgaatatggtgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAGATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACCGGTGGTGGC

upper sequence: LOC_Os09g26880.3 (Oryza sativa), 3'ss of exon 12
lower sequence: GLYMA09G08150.2 (Glycine max), 3'ss of exon 11
------------------------------------------------acacctttcttttacacgctctcagatttcttttactgcc-------atgccccataagacatgaaatgactatggtagtg-atgtt-cttgctctt---------cttgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA
                                                |    |||    ||||| ||     | ||   | ||   |       |||        ||  |  | |  |     ||||  || || |||| || |           || ||  |||||| |  |||||||| ||||| || || |||| ||| || || |||||||| |||||||||||||| || |||||||||||||| || || |||||||| 
gtaagtactcacaaacttatttttgtcctatcctttggatctctgctaatgagtttggcctacacacttcagtacttgactaacaatcctataagatgtttgtggtgatttatagttgcacaaatagtatattttacttgttcatgggtgtaaatatggtgcgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGGAGCTGAAATTGGTGGTGCCTTTGGTGGAGAAAAGGCGACAGGTGGTGGC

upper sequence: LOC_Os09g26880.3 (Oryza sativa), 3'ss of exon 12
lower sequence: AT1G54100.2 (Arabidopsis thaliana), 3'ss of exon 12
acacctttcttttacacgctctcagatttcttttactgccatgccccataagaca-tgaaatgactatggtagtgatgttcttgctcttcttgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA
  |  |    |  | ||     |  |  ||  |   | ||   |   ||||   | |||||| | | |    |||||| | || ||  |          || || |  || ||||||||||||||||| ||||| || || || || ||||| ||||| ||||||||||||||||| || || ||||| ||||||||||| 
gtaagtgctataaaaacaacaacttaactcaatcttt-ccgaccaatataatctactgaaattaattttaatgtgatggttttactact----------agACCACTGGGAAGTGACTGTGGCATTGTGAATGTGAACATACCGACGAATGGAGCTGAGATTGGTGGAGCTTTTGGAGGCGAGAAAGCGACTGGTGGTGGT

upper sequence: LOC_Os09g26880.3 (Oryza sativa), 3'ss of exon 12
lower sequence: Vv11s0016g00900.t01 (Vitis vinifera), 3'ss of exon 12
--acacctttcttttacacgctctcagatttcttttactgccatgccccataagacatgaa-atgactatggta-gtgatgttcttgctcttcttgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA
  | |      | ||  | |   | | |  |     | ||      |   ||   ||| ||  |  || ||  |  |  ||||| |  | |   |  | |||||||| ||||| ||||||||||| ||||| ||||||||||| || |||||||| ||||| ||||||||||||||||| |||||||| || ||||||||||| 
gaagaggcagttgttgaatgtcatgacacataagggattggtggatc---tagtgcattaatgtccctgtgaaatattttgttcata-tatgagtattatacagGCCACATGGAAGTGACTGTGGTATTGTGAATGTAAATATACCTACAAATGGAGCTGAGATTGGTGGAGCTTTTGGGGGAGAAAAGGCAACTGGTGGTGGT

upper sequence: LOC_Os09g26880.3 (Oryza sativa), 3'ss of exon 12
lower sequence: EFJ31432 (Selaginella moellendorffii), 3'ss of exon 12
acacctttcttttacacgctctcagatttcttttactgccatgccccataagacatgaaatgactatggtagtgatgttcttgctcttcttgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA
                                     |  |  |     ||    |    |  ||   | |      |||| | ||    |||||| ||||||    || || || ||||| || ||||| ||||| ||||||||||| || ||||| ||||| || |||||||| || || || |||||||| || || 
-------------------------------------gtaacacgattgaaagtttctcgtctcttctgaaac----ttctagatcaa--tgctgtccagGCCAACAGGAAGCGATTGTGGGATCGTTAACGTAAACATTCCCACAAACGGCGCTGAGATTGGCGGTGCTTTTGGCGGTGAGAAGGCTACTGGCGGCGGT

upper sequence: LOC_Os09g26880.3 (Oryza sativa), 3'ss of exon 12
lower sequence: EFJ38712 (Selaginella moellendorffii), 3'ss of exon 12
acacctttcttttacacgctctcagatttcttttactgccatgccccataagacatgaaatgactatggtagtgatgttcttgctcttcttgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA
                                          |   ||  |   |     |  |     |  |||   |  |  |  ||   | || ||||||    || || || ||||| || ||||| ||||| ||||||||||| |||||||| ||||| || |||||||| || || || |||||||| || || 
------------------------------------------gtaacacgattgaaagtttctcgtctcttctgaaacttcta-tgatcaatccgtccagGCCAACAGGAAGCGATTGTGGGATCGTTAACGTAAACATTCCCACAAACGGTGCTGAGATTGGCGGTGCTTTTGGCGGTGAGAAGGCTACTGGCGGCGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18385463|gb|BM418662.1|BM418662
EST:     CACGTTCTATATGTTACCAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: CA-GTTCTATAT-TTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|33364555|gb|BP432941.1|BP432941
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29669203|gb|CB665478.1|CB665478
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29655856|gb|CB652131.1|CB652131
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29674835|gb|CB671110.1|CB671110
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29668656|gb|CB664931.1|CB664931
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|88850062|gb|CI091357.1|CI091357
EST:     TACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: TACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|86525119|gb|CI165325.1|CI165325
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|88850211|gb|CI091704.1|CI091704
EST:     TTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: TTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|88850091|gb|CI091386.1|CI091386
EST:     TTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: TTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|3462549|gb|AF074787.1|AF074787
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29638872|gb|CB643881.1|CB643881
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29665769|gb|CB662044.1|CB662044
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29664946|gb|CB661221.1|CB661221
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|88834218|gb|CI000582.1|CI000582
EST:     CTATATTTACAAAGAGACCAGATATTATTTTCAATTGGAGTGG                         TCCTCATGGTAGTGACTGTGGCATTGGTAATGTAAATATTCCCACAAATGG
genomic: CTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29670253|gb|CB666528.1|CB666528
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|86430515|gb|CI082938.1|CI082938
EST:     TTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: TTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29619465|gb|CB624477.1|CB624477
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29617472|gb|CB622484.1|CB622484
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29670275|gb|CB666550.1|CB666550
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|86525160|gb|CI165366.1|CI165366
EST:     TTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: TTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|15858562|gb|BI811374.1|BI811374
EST:     CAGTTCTATATTTACACAAGAGACCACGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACACAATG
genomic: CAGTTCTATATTTACA-AAGAGACCA-GATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACA-AATG
EST: gi|29663941|gb|CB660216.1|CB660216
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|89166746|gb|CI104032.1|CI104032
EST:     TTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: TTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29663938|gb|CB660213.1|CB660213
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|86413205|gb|CI067610.1|CI067610
EST:     CAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: CAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29629464|gb|CB634473.1|CB634473
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29656048|gb|CB652323.1|CB652323
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29664016|gb|CB660291.1|CB660291
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29639263|gb|CB644272.1|CB644272
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29673830|gb|CB670105.1|CB670105
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29613124|gb|CB618137.1|CB618137
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29628533|gb|CB633544.1|CB633544
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29631159|gb|CB636168.1|CB636168
EST:     TCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: TCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29663978|gb|CB660253.1|CB660253
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|88976985|gb|CI257681.1|CI257681
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|86426989|gb|CI072086.1|CI072086
EST:     AAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29677489|gb|CB673764.1|CB673764
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|8528195|gb|AU093010.1|AU093010
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29656046|gb|CB652321.1|CB652321
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|88955701|gb|CI091990.1|CI091990
EST:     AAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29612883|gb|CB617896.1|CB617896
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|89195196|gb|CI051309.1|CI051309
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|58691415|gb|CK080102.1|CK080102
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29668605|gb|CB664880.1|CB664880
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29667911|gb|CB664186.1|CB664186
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29623916|gb|CB628927.1|CB628927
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29667685|gb|CB663960.1|CB663960
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29628522|gb|CB633533.1|CB633533
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29664485|gb|CB660760.1|CB660760
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|15854707|gb|BI807519.1|BI807519
EST:     TCAAGTGGATTGG                         GCCTCATGGTAGGTGACTGTGGCATTGTTAATGTAAATATTCCCAC-AATG
genomic: TCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTA-GTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATG
EST: gi|33683879|gb|CF312118.1|CF312118
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29673253|gb|CB669528.1|CB669528
EST:     AGCATTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29672296|gb|CB668571.1|CB668571
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29668614|gb|CB664889.1|CB664889
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         CCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|29663939|gb|CB660214.1|CB660214
EST:     AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: AGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
EST: gi|88848224|gb|CI086746.1|CI086746
EST:     TTCAAGTGGATTGG                         GCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG
genomic: TTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 57

AATCTGAAGGAAGCAGTTGAAATCAACAATTCTGTTCCTCAAGGATTGAGCAGTTCTATATTTACAAAGAGACCAGATATTATTTTCAAGTGGATTGGgtaagtgtca ... tgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccataagacatgaaatgactatggtagtgatgttcttgctcttcttgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA
                                ttcttgctcttcttgc  CT-rich tract
         atgaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acacctttcttttacacgctctcagatttcttttactgccatgccccataagacatgaaatgactatggtagtgatgttcttgctcttcttgctgtacagGCCTCATGGTAGTGACTGTGGCATTGTTAATGTAAATATTCCCACAAATGGTGCTGAAATTGGTGGAGCTTTTGGTGGAGAAAAAGCTACTGGTGGTGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - cacgctc
- - - - - - - - - - - - - - - - -tactgcc
- - - - - - - - - - - - - - - - - - - - -tgcccca
- - - - - - - - - - - - - - - - - - - - - - - - - - -catgaaa