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gttaacttgtttccccgaaatgctgtctgctgattgcatgtatctacttatttatttgtttatgaacttgctattaatgattaaaaaatgcatgctaatttgttagGTTCATTTGATTGATGGCCGAGGGGCTACAAGCTCCAGTCTTGATTCTGCAAGACAGAATCTGGCGGCAACATTTGTCAATGCATTCGTGAATGCTGGAT
species | Oryza sativa |
transcript | LOC_Os09g15750.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CACGAGAGATTGAGGTCATGGAGCCAAAATCTCCAGAAGACATATATAAG GTTCATTTGATTGATGGCCGAGGGGCTACAAGCTCCAGTCTTGATTCTGCAEST: gi|87008884|gb|CI304827.1|CI304827
genomic: CACGAGATATTGAGGTCATGGAGCCAAAATCTCCAGAAGACATATATAAGgttaacttgt ... aatttgttagGTTCATTTGATTGATGGCCGAGGGGCTACAAGCTCCAGTCTTGATTCTGCA
EST: CACGAGATATTGAGGTCATGGAGCCAAAATCTCCAGAAGACATATATAAG GTTCATTTGATTGATGGCCGAGGGGCTACAAGCTCCAGTCTTGATTCCGCAEST: gi|29682161|gb|CB678436.1|CB678436
genomic: CACGAGATATTGAGGTCATGGAGCCAAAATCTCCAGAAGACATATATAAGgttaacttgt ... aatttgttagGTTCATTTGATTGATGGCCGAGGGGCTACAAGCTCCAGTCTTGATTCTGCA
EST: CACGAGATATTGAGGTCATGGAGCCAAAATCTCCAGAAGACATATATAAG GTTCATTTGATTGATGGCCGAGGGGCTACAAGCTCCAGTCTTGATTCTGCAEST: gi|58657236|gb|CK045916.1|CK045916
genomic: CACGAGATATTGAGGTCATGGAGCCAAAATCTCCAGAAGACATATATAAGgttaacttgt ... aatttgttagGTTCATTTGATTGATGGCCGAGGGGCTACAAGCTCCAGTCTTGATTCTGCA
EST: CACGAGATATTGAGGTCATGGAGCCAAAATCTCCAGAAGACATATATAAG GTTCATTTGATTGATGGCCGAGGGGCTACAAGCTCCAGTCTTGATTCTGCA
genomic: CACGAGATATTGAGGTCATGGAGCCAAAATCTCCAGAAGACATATATAAGgttaacttgt ... aatttgttagGTTCATTTGATTGATGGCCGAGGGGCTACAAGCTCCAGTCTTGATTCTGCA
ttatttgtttatgaacttgctattaatgattaaaaaatgcatgctaatttgttagGTTCATTTGATTGATGGCCGAGGGGCTACAAGCTCCAGTCTTGATTCTGCAAGACAGAATCTGGCGGCAACATTTGTCAATGCATTCGTGAATGCTGGAT
tgctaat putative branch site (score: 30)
ttgctattaatgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaacttgtttccccgaaatgctgtctgctgattgcatgtatctacttatttatttgtttatgaacttgctattaatgattaaaaaatgcatgctaatttgttagGTTCATTTGATTGATGGCCGAGGGGCTACAAGCTCCAGTCTTGATTCTGCAAGACAGAATCTGGCGGCAACATTTGTCAATGCATTCGTGAATGCTGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA