1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tcactgagctatccatcaaattatttctatctgctgttaactaaagaatactttctcaacttgtgtacttactacattaggtggcttcctattattgtagGCTGATCCACATTGCTCATATGAAGTGAGTCTTCGTGTTTCACTTAGTGCTGCAGCAAGCAGATTCTTTTTGCTGTACTCATCACAG
species | Oryza sativa |
transcript | LOC_Os09g09360.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCCTTTGGGATTCACATCAAGGGACTGAAAGATCTACTGTGCTTGTCCTG GCTGATCCACATTGCTCATATGAAGTGAGTCTTCGTGTTTCACTTAGTGCTEST: gi|29626439|gb|CB631450.1|CB631450
genomic: CCCTTTGGGATTCACATCAAGGGACTGAAAGATCTACTGTGCTTGTCCTGgtaagtttat ... attattgtagGCTGATCCACATTGCTCATATGAAGTGAGTCTTCGTGTTTCACTTAGTGCT
EST: CCCTTTGGGATTCACATCAAGGGACTGAAAGATCTACTGTGCTTGTCCTG GCTGATCCACATTGCTCATATGAAGTGAGTCTTCGTGTTTCACTTAGTGCT
genomic: CCCTTTGGGATTCACATCAAGGGACTGAAAGATCTACTGTGCTTGTCCTGgtaagtttat ... attattgtagGCTGATCCACATTGCTCATATGAAGTGAGTCTTCGTGTTTCACTTAGTGCT
gaatactttctcaacttgtgtacttactacattaggtggcttcctattattgtagGCTGATCCACATTGCTCATATGAAGTGAGTCTTCGTGTTTCACTTAGTGCTGCAGCAAGCAGATTCTTTTTGCTGTACTCATCACAG
tacttac putative branch site (score: 12)
cttcctatt putative PPT
tattattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcactgagctatccatcaaattatttctatctgctgttaactaaagaatactttctcaacttgtgtacttactacattaggtggcttcctattattgtagGCTGATCCACATTGCTCATATGAAGTGAGTCTTCGTGTTTCACTTAGTGCTGCAGCAAGCAGATTCTTTTTGCTGTACTCATCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - -catcaaa
- - - - - - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - - - aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggcttc