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...tcagatattctcagttgtaattctttttggacattgcatctataatacatatttctcatagtccctgatataaatgaacttaatattgtcgtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT
species | Oryza sativa |
transcript | LOC_Os09g07830.3 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCEST: gi|88265504|gb|CI376406.1|CI376406
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: GACATCCTCTT-GATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT TTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCEST: gi|88278180|gb|CI399180.1|CI399180
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: ACATCCTCTTGGATCCAGTGGTGCTCGAATTTTTGGTCACCCTGCTT-GT NEST: gi|88278180|gb|CI399180.1|CI399180
genomic: ACATCCTCTTGGATGCAGTGGTGCTCGAA-TTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatag-
EST: ACATCCTCTTGGATCCAGTGGTGCTCGAATTTTTGGTCACCCTGCTT-GT NEST: gi|88462858|gb|CI519770.1|CI519770
genomic: ACATCCTCTTGGATGCAGTGGTGCTCGAA-TTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatag-
EST: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCEST: gi|88959704|gb|CI002314.1|CI002314
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT GTTCTTAGGGAGAAAGGTGGCCAAATCGGAGTTGCTGGTGTTTGCAATGGCEST: gi|88291122|gb|CI527512.1|CI527512
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: GACATCCTCTTGGATGCANTGGTGCTCGAATTTTGGTCACCCTGCTTGGT GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCEST: gi|86536502|gb|CI176708.1|CI176708
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGTT GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCEST: gi|88273759|gb|CI394165.1|CI394165
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: TCGAATTTTGGTCACCCTGCTTGGT GTTC-TAGGGAGAAAGGTGGCAAAATGGGAG-TGCTGG-GTTTGCAATGGCEST: gi|86537651|gb|CI177857.1|CI177857
genomic: TCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: TGGTGCTCGAATTTTGGTCACCCTGCTTGGT GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCEST: gi|88522268|gb|CI450014.1|CI450014
genomic: TGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCEST: gi|88267020|gb|CI378955.1|CI378955
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCEST: gi|88468140|gb|CI517599.1|CI517599
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCEST: gi|88267537|gb|CI379472.1|CI379472
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCEST: gi|89198029|gb|CI117507.1|CI117507
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCEST: gi|88295383|gb|CI527746.1|CI527746
genomic: GACATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
EST: ANCATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGT GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
genomic: A-CATCCTCTTGGATGCAGTGGTGCTCGAATTTTGGTCACCCTGCTTGGTgtaagtttta ... gtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGC
tacatatttctcatagtccctgatataaatgaacttaatattgtcgtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT
acttaat putative branch site (score: 4)
tgatataaatgaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagatattctcagttgtaattctttttggacattgcatctataatacatatttctcatagtccctgatataaatgaacttaatattgtcgtttgaatagGTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC