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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagattccttcagtcatatcaaaactttaaaaatatagtaggaatgtgatcgattcatttattttctccccttactcatgttggtgccccacatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAATGGCAGCAACAGCCTAATTCAGTGACAGTTTTTGTTTCTCCATCTTGT

Basic information

species Oryza sativa
transcript LOC_Os08g42410.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27921334|gb|CB097142.1|CB097142
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|86540582|gb|CI180788.1|CI180788
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|88902548|gb|CI088086.1|CI088086
EST:     ATGTGCCCATGCCNTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|88270089|gb|CI381387.1|CI381387
EST:     TGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGACCAGTACCA
genomic: TGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|88961781|gb|CI096947.1|CI096947
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGCTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|89191954|gb|CI250895.1|CI250895
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|58608415|gb|CK036448.1|CK036448
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|86869997|gb|CI317918.1|CI317918
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGCCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|218478794|gb|FG960305.1|FG960305
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|86538601|gb|CI178807.1|CI178807
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|88997696|gb|CI390298.1|CI390298
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGTCTGTTCCACAG                         GTTGAGGACATTTTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|87020958|gb|CI269675.1|CI269675
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|88251000|gb|CI349230.1|CI349230
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|88837903|gb|CI371481.1|CI371481
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|88226935|gb|CI224703.1|CI224703
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|88908304|gb|CI090897.1|CI090897
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|89168103|gb|CI109307.1|CI109307
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|86538593|gb|CI178799.1|CI178799
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|33824376|gb|CF338005.1|CF338005
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|29614435|gb|CB619448.1|CB619448
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|86843428|gb|CI341481.1|CI341481
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|88844973|gb|CI022327.1|CI022327
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|89192853|gb|CI050151.1|CI050151
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|86538636|gb|CI178842.1|CI178842
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|88991256|gb|CI108643.1|CI108643
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|42591826|gb|CK738312.1|CK738312
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|38475005|gb|CF959138.1|CF959138
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|88459855|gb|CI524314.1|CI524314
EST:     GATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: GATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|88960452|gb|CI006413.1|CI006413
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|86854408|gb|CI256530.1|CI256530
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|89193766|gb|CI116399.1|CI116399
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|86427084|gb|CI072181.1|CI072181
EST:     ATGTGCCCATGCCTTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|86823435|gb|CI256396.1|CI256396
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|86540610|gb|CI180816.1|CI180816
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCGTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|88245198|gb|CI245047.1|CI245047
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
EST: gi|86495018|gb|CI137651.1|CI137651
EST:     ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAG                         GTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA
genomic: ATGTGCCCATGCCCTACGCTGCCAACCTTGAGAGGATGGCTGTTCCACAGgtacttacgg ... acatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgatcgattcatttattttctccccttactcatgttggtgccccacatttgcagGTTGAGGACATTGTTCGTGCAGCGAAGCGAGCCTGCTACAGAGCAGTACCAATGGCAGCAACAGCCTAATTCAGTGACAGTTTTTGTTTCTCCATCTTGT
                       cccttac  putative branch site (score: 3)
       attcatttattttct  TA-rich tract