1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ttgttagatgcactcttcagttgcaattttggtgtgtttggatcaagtttgatacacgattttgttaatttggagttcttttttcctttttgttttccagTCAGATTCAGCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGTGGAACATTGGGTGGTATTGTTACAACAGTTGAAGGTTTAATTGTGAAAA
species | Oryza sativa |
transcript | LOC_Os08g36774.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTACACTACGTGTGCAGAACGGAAAAGATCTTACACGTGATGTCATAAAG TCAGATTCAGCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGTEST: gi|88225974|gb|CI225890.1|CI225890
genomic: TTACACTACGTGTGCAGAACGGAAAAGATCTTACACGTGATGTCATAAAGgtcagaaatt ... tgttttccagTCAGATTCAGCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGT
EST: TTACACTACGTGTGCAGAACGGAAAAGATCTTACACGTGATGTCATAAAG TCAGATTCAGCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGTEST: gi|88219195|gb|CI220468.1|CI220468
genomic: TTACACTACGTGTGCAGAACGGAAAAGATCTTACACGTGATGTCATAAAGgtcagaaatt ... tgttttccagTCAGATTCAGCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGT
EST: GAAAAGATCTTACACGTGATGTCATAAAG TCAGATTCAGCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGTEST: gi|218492385|gb|FG960643.1|FG960643
genomic: GAAAAGATCTTACACGTGATGTCATAAAGgtcagaaatt ... tgttttccagTCAGATTCAGCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGT
EST: TTACACTACGTGTGCAGAACGGAAAAGATCT-ACACGTGATGTCATAAAG TCAGATTCAGCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGTEST: gi|29633610|gb|CB638619.1|CB638619
genomic: TTACACTACGTGTGCAGAACGGAAAAGATCTTACACGTGATGTCATAAAGgtcagaaatt ... tgttttccagTCAGATTCAGCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGT
EST: TTACACTACGTGTGCAGAACGGAAAAGATCTTACACGTGATGTCATAAAG TCAGATTCAGCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGT
genomic: TTACACTACGTGTGCAGAACGGAAAAGATCTTACACGTGATGTCATAAAGgtcagaaatt ... tgttttccagTCAGATTCAGCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGT
agtttgatacacgattttgttaatttggagttcttttttcctttttgttttccagTCAGATTCAGCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGTGGAACATTGGGTGGTATTGTTACAACAGTTGAAGGTTTAATTGTGAAAA
tgttaat putative branch site (score: 9)
ttcttttttccttttt putative PPT
attttgttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttagatgcactcttcagttgcaattttggtgtgtttggatcaagtttgatacacgattttgttaatttggagttcttttttcctttttgttttccagTCAGATTCAGCTGGCGTAAAAGTACCTGAACTCGAGTTGGAGCTAGCAAGTGGAACATTGGGTGGTATTGTTACAACAGTTGAAGGTTTAATTGTGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - gatgcac
- - - - - - - - -cagttgc
- - - - - - - - - - - - - - - - -gtgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - gatacac