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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcgagaaaaaagaactttttgcccatcactctcaaaactggaaaaaaaattagggtttcacattttattgtaatttgttaattccaacatttctttcagCCTCAACATGGGAACTAAGAAGGTTGAACCCACCAGGATCATCAACTCCGAAATGCCTTGTTACTCATATGTTGGAAATGAGCCCAAGTTTTTGGGATAG

Basic information

species Oryza sativa
transcript LOC_Os08g34060.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14571409|gb|BI118777.1|BI118777
EST:     ACAAAAATCAATT                         CCTCAACATGGGAACTAAGAAGGTTGAACCCACCAGGATCATCAACTCCGA
genomic: ACAAAAATCAATTgtaagattca ... tttctttcagCCTCAACATGGGAACTAAGAAGGTTGAACCCACCAGGATCATCAACTCCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaattagggtttcacattttattgtaatttgttaattccaacatttctttcagCCTCAACATGGGAACTAAGAAGGTTGAACCCACCAGGATCATCAACTCCGAAATGCCTTGTTACTCATATGTTGGAAATGAGCCCAAGTTTTTGGGATAG
                               tgttaat  putative branch site (score: 3)
                                           catttctttc  putative PPT
           tttcacattttattgt  TA-rich tract