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...ttgtttaacttgtactttcgcacaaatattttaatgcaaccttattttgtctttataatactgctttccacttacttggatcgttctctcaatttttcagTGATCATGTTTTTGATATCCTGGTCTTTTACTGTTGTCTCCCTTGCCCTTGCAAGCCTCATCTATTACTATGTGAGCTTAAAAGGTAAGGCTGGAGACTG
species | Oryza sativa |
transcript | LOC_Os08g23440.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAAATTTCACCATTGGAGTTTATCACTTGTTGGTGCATTGCTTTGTGTTG TGATCATGTTTTTGATATCCTGGTCTTTTACTGTTGTCTCCCTTGCCCTTGEST: gi|29686364|gb|CB682639.1|CB682639
genomic: GAAATTTCACCATTGGAGTTTATCACTTGTTGGTGCATTGCTTTGTGTTGgtatgactat ... aatttttcagTGATCATGTTTTTGATATCCTGGTCTTTTACTGTTGTCTCCCTTGCCCTTG
EST: GAAATTTCACCATTGGAGTTTATCACTTGTTGGTGCATTGCTTTGTGTTG TGATCATGTTTTTGATATCCTGGTCTTTTACTGTTGTCTCCCTTGCCCTTGEST: gi|29621951|gb|CB626962.1|CB626962
genomic: GAAATTTCACCATTGGAGTTTATCACTTGTTGGTGCATTGCTTTGTGTTGgtatgactat ... aatttttcagTGATCATGTTTTTGATATCCTGGTCTTTTACTGTTGTCTCCCTTGCCCTTG
EST: GAAATTTCACCATTGGAGTTTATCACTTGTTGGTGCATTGCTTTGTGTTG TGATCATGTTTTTGATATCCTGGTCTTTTACTGTTGTCTCCCTTGCCCTTG
genomic: GAAATTTCACCATTGGAGTTTATCACTTGTTGGTGCATTGCTTTGTGTTGgtatgactat ... aatttttcagTGATCATGTTTTTGATATCCTGGTCTTTTACTGTTGTCTCCCTTGCCCTTG
tttgtctttataatactgctttccacttacttggatcgttctctcaatttttcagTGATCATGTTTTTGATATCCTGGTCTTTTACTGTTGTCTCCCTTGCCCTTGCAAGCCTCATCTATTACTATGTGAGCTTAAAAGGTAAGGCTGGAGACTG
cacttac putative branch site (score: 2)
ttctctcaatttttc putative PPT
tttataatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtttaacttgtactttcgcacaaatattttaatgcaaccttattttgtctttataatactgctttccacttacttggatcgttctctcaatttttcagTGATCATGTTTTTGATATCCTGGTCTTTTACTGTTGTCTCCCTTGCCCTTGCAAGCCTCATCTATTACTATGTGAGCTTAAAAGGTAAGGCTGGAGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - -gcacaaa
- - - - - - - - - - - - - - - -taatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcttt