1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...attgttggatattatacagcaataccacttcagtgtcaacttactctttccatattttgtgcttaattttaaaatcctgtgcccagttaccatttagcagAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGGCTTAAAGCTTGAACAGTTTATATTTGACGTGTTCACCTATTCTCCATCAACAGCTCTTTTTGA
species | Oryza sativa |
transcript | LOC_Os08g10600.3 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTTEST: gi|29616665|gb|CB621677.1|CB621677
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTTEST: gi|29616665|gb|CB621677.1|CB621677
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTTEST: gi|29616665|gb|CB621677.1|CB621677
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTTEST: gi|29616665|gb|CB621677.1|CB621677
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTTEST: gi|29616665|gb|CB621677.1|CB621677
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTTEST: gi|29685401|gb|CB681676.1|CB681676
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTTEST: gi|29685401|gb|CB681676.1|CB681676
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTTEST: gi|29685401|gb|CB681676.1|CB681676
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTTEST: gi|29685401|gb|CB681676.1|CB681676
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTTEST: gi|29685401|gb|CB681676.1|CB681676
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTTEST: gi|29685401|gb|CB681676.1|CB681676
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTTEST: gi|29674853|gb|CB671128.1|CB671128
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTTEST: gi|29674853|gb|CB671128.1|CB671128
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTTEST: gi|29674853|gb|CB671128.1|CB671128
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTTEST: gi|29674853|gb|CB671128.1|CB671128
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTTEST: gi|29674853|gb|CB671128.1|CB671128
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTTEST: gi|29674853|gb|CB671128.1|CB671128
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATTTACCATTT
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAG-------CA--Tgtaagtattg ... ca
ctttccatattttgtgcttaattttaaaatcctgtgcccagttaccatttagcagAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGGCTTAAAGCTTGAACAGTTTATATTTGACGTGTTCACCTATTCTCCATCAACAGCTCTTTTTGA
gcttaat putative branch site (score: 4)
atattttgtgcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgttggatattatacagcaataccacttcagtgtcaacttactctttccatattttgtgcttaattttaaaatcctgtgcccagttaccatttagcagAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGGCTTAAAGCTTGAACAGTTTATATTTGACGTGTTCACCTATTCTCCATCAACAGCTCTTTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
attgttg
- - - - - - - tacagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgtgc