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...cttcctgcaatgtgattgttggatattatacagcaataccacttcagtgtcaacttactctttccatattttgtgcttaattttaaaatcctgtgcccagTTACCATTTAGCAGAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGGCTTAAAGCTTGAACAGTTTATATTTGACGTGTTCACCTATTCTCCATCA
species | Oryza sativa |
transcript | LOC_Os08g10600.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCAT TTACCATTTAGCAGAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGGEST: gi|29685401|gb|CB681676.1|CB681676
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATgtaagtattg ... ctgtgcccagTTACCATTTAGCAGAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGG
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCAT TTACCATTTAGCAGAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGGEST: gi|29674853|gb|CB671128.1|CB671128
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATgtaagtattg ... ctgtgcccagTTACCATTTAGCAGAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGG
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCAT TTACCATTTAGCAGAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGGEST: gi|29616665|gb|CB621677.1|CB621677
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATgtaagtattg ... ctgtgcccagTTACCATTTAGCAGAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGG
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCAT TTACCATTTAGCAGAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGGEST: gi|3767528|gb|AU031622.1|AU031622
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATgtaagtattg ... ctgtgcccagTTACCATTTAGCAGAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGG
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCAT TTACCATTTAGCAGAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGGEST: gi|29685402|gb|CB681677.1|CB681677
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATgtaagtattg ... ctgtgcccagTTACCATTTAGCAGAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGG
EST: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCAT TTACCATTTAGCAGAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGG
genomic: ACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATgtaagtattg ... ctgtgcccagTTACCATTTAGCAGAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGG
agtgtcaacttactctttccatattttgtgcttaattttaaaatcctgtgcccagTTACCATTTAGCAGAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGGCTTAAAGCTTGAACAGTTTATATTTGACGTGTTCACCTATTCTCCATCA
atattttgtgcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcctgcaatgtgattgttggatattatacagcaataccacttcagtgtcaacttactctttccatattttgtgcttaattttaaaatcctgtgcccagTTACCATTTAGCAGAGAAGAAGATTCCTTCAATCCATGGGTACACGGCAGGCTTAAAGCTTGAACAGTTTATATTTGACGTGTTCACCTATTCTCCATCA
- tcctgca
- - - - - - tgattgt
- - - - - - - - - - - - - - tacagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttaa