1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtgagcctgtttgctcttgtgctcctatgccttaaataatttatacctatatcatacatagattctgtaatttggcatttattactatatttgatataatgtaaatttgaaattcacttgtttatgtttccttgtatctccagTTGATTCTCTTTGCCTCGATGGCCCAGGATGGGAAGATAGAGCTAAACATCCATTTGATGTAATATACGAG
species | Oryza sativa |
transcript | LOC_Os07g47530.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CATTGATCTTGGAGGCAATTGCGAGGTTGACCGTGGTTTCTTTTGTCCAG TTGATTCTCTCTGCCTCGATGGCCCAGGATGGGAAGATAGAGCTAAACATCEST: gi|29632741|gb|CB637750.1|CB637750
genomic: CATTGATCTTGGAGGCAATTGCGAGGTTGACCGTGGTTTCTTTTGTCCAGgtgagcctgt ... gtatctccagTTGATTCTCTTTGCCTCGATGGCCCAGGATGGGAAGATAGAGCTAAACATC
EST: CATTGATCTTGGAGGCAATTGCGAGGTTGACCGTGGTTTCTTTTGTCCAG TTGATTCTCTTTGCCTCGATGGCCCAGGATGGGAAGATAGAGCTAAACATCEST: gi|58610845|gb|CK038557.1|CK038557
genomic: CATTGATCTTGGAGGCAATTGCGAGGTTGACCGTGGTTTCTTTTGTCCAGgtgagcctgt ... gtatctccagTTGATTCTCTTTGCCTCGATGGCCCAGGATGGGAAGATAGAGCTAAACATC
EST: CATTGATCTTGGAGGCAATTGCGAGGTTGACCGTGGTTTCTTTTGTCCAG TTGATTCTCTCTGCCTCGATGGCCCAGGATGGGAAGATAGAGCTAAACATCEST: gi|58658063|gb|CK046743.1|CK046743
genomic: CATTGATCTTGGAGGCAATTGCGAGGTTGACCGTGGTTTCTTTTGTCCAGgtgagcctgt ... gtatctccagTTGATTCTCTTTGCCTCGATGGCCCAGGATGGGAAGATAGAGCTAAACATC
EST: GGTTTC-TTTGTCCAG TTGATTCTCTCTGCCTCGATGGCCCAGGATGGGAAGATAGAGCGAAACATCEST: gi|29685521|gb|CB681796.1|CB681796
genomic: GGTTTCTTTTGTCCAGgtgagcctgt ... gtatctccagTTGATTCTCTTTGCCTCGATGGCCCAGGATGGGAAGATAGAGCTAAACATC
EST: CATTGATCTTGGAGGCAATTGCGAGGTTGACCGTGGTTTCTTTTGTCCAG TTGATTCTCTTTGCCTCGATGGCCCAGGATGGGAAGATAGAGCTAAACATCEST: gi|25797788|gb|CA753749.1|CA753749
genomic: CATTGATCTTGGAGGCAATTGCGAGGTTGACCGTGGTTTCTTTTGTCCAGgtgagcctgt ... gtatctccagTTGATTCTCTTTGCCTCGATGGCCCAGGATGGGAAGATAGAGCTAAACATC
EST: CATTGATCTTGGAGGCAATTGCGAGGTTGACCGTGGTTTCTTTTGTCCAG TTGATTCTCTTTGCCTCGATGGCCCAGGATGGGAAGATAGAGCTAAACATCEST: gi|58608751|gb|CK036784.1|CK036784
genomic: CATTGATCTTGGAGGCAATTGCGAGGTTGACCGTGGTTTCTTTTGTCCAGgtgagcctgt ... gtatctccagTTGATTCTCTTTGCCTCGATGGCCCAGGATGGGAAGATAGAGCTAAACATC
EST: CATTGATCTTGGAGGCAATTGCGAGGTTGACCGTGGTTTCTTTTGTCCAG TTGATTCTCTCTGCCTCGATGGCCCAGGATGGGAAGATACCGCTAAACATC
genomic: CATTGATCTTGGAGGCAATTGCGAGGTTGACCGTGGTTTCTTTTGTCCAGgtgagcctgt ... gtatctccagTTGATTCTCTTTGCCTCGATGGCCCAGGATGGGAAGATAGAGCTAAACATC
atttgatataatgtaaatttgaaattcacttgtttatgtttccttgtatctccagTTGATTCTCTTTGCCTCGATGGCCCAGGATGGGAAGATAGAGCTAAACATCCATTTGATGTAATATACGAG
atttgat putative branch site (score: 33)
tttccttgtatctcc putative PPT
atataatgtaaatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcctgtttgctcttgtgctcctatgccttaaataatttatacctatatcatacatagattctgtaatttggcatttattactatatttgatataatgtaaatttgaaattcacttgtttatgtttccttgtatctccagTTGATTCTCTTTGCCTCGATGGCCCAGGATGGGAAGATAGAGCTAAACATCCATTTGATGTAATATACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT