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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaaactgtgaaagaaacgtgcaattcttccctcctgttttagagctgaaaattcatgtcaatcatgtgaaactttcagATATCTACATGAAACTTGTTCACCTTCCGTGATACACAAGAATTTCAAGTCATCCAATATTTTTCTGGATAACGAGCTAAATCCCCATCTTTCAGATTCT

Basic information

species Oryza sativa
transcript LOC_Os07g42626.3
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g42626.3 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G121573_T01 (Zea mays), 3'ss of exon 12
gtaagtgaaactgtgaaagaaacgtgcaattcttccctcctgttttagagctgaaaattcatgtcaatcatgtgaaactttcagATATCTACATGAAACTTGTTCACCTTCCGTGATACACAAGAATTTCAAGTCATCCAATATTTTTCTGGATAACGAGCTAAATCCCCATCTTTCAGATTCT
|||||||   | |       |  ||          || ||| ||||||| || | || | |||  |||||| ||||  |||||| || |||||||| ||||||||||| || ||| | ||||||||||||||||||||||| |||||  |||||   ||||| |  ||||| || || ||||||
gtaagtggtgcaggctcgtcattgtcagcggtcagcccccttttttagaactaacaagttatggtaatcatatgaacttttcagGTACCTACATGAGACTTGTTCACCCTCTGTGGTCCACAAGAATTTCAAGTCATCCAACATTTTATTGGATGGTGAGCTGACCCCCCACCTCTCTGATTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58663879|gb|CK052565.1|CK052565
EST:     TCTTGGAATAGCCGTGTGAAGATTGCCCTTGGATCTGCGAGGGCATTAGA                         ATATCTACATGAAACTTGTTCACCTTCCGTGATACACAGAGGAATTTCAAG
genomic: TCTTGGAATAGCCGTGTGAAGATTGCCCTTGGATCTGCGAGGGCATTAGAgtaagtgaaa ... aaactttcagATATCTACATGAAACTTGTTCACCTTCCGTGATACACA-AG-AATTTCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttccctcctgttttagagctgaaaattcatgtcaatcatgtgaaactttcagATATCTACATGAAACTTGTTCACCTTCCGTGATACACAAGAATTTCAAGTCATCCAATATTTTTCTGGATAACGAGCTAAATCCCCATCTTTCAGATTCT
                                                ctttc  CT-rich tract
                        aaaattcat  TA-rich tract