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gtaatgactgttactattatcatggcactgatacatcaaaaaaatttgggatggtacttttacagtatgctgagagtttgaaactttgcatggcagGAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTACAAGACTTGGTTTGGGGTTAGTCCCAGCTGCCTGTTCACTGCTCTCAGC
species | Oryza sativa |
transcript | LOC_Os07g39010.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAG GAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTAEST: gi|29630209|gb|CB635218.1|CB635218
genomic: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAGgtaatgactg ... tgcatggcagGAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTA
EST: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAG GAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTAEST: gi|29638656|gb|CB643665.1|CB643665
genomic: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAGgtaatgactg ... tgcatggcagGAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTA
EST: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAG GAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTAEST: gi|29666892|gb|CB663167.1|CB663167
genomic: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAGgtaatgactg ... tgcatggcagGAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTA
EST: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAG GAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTAEST: gi|4715053|gb|AU056170.1|AU056170
genomic: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAGgtaatgactg ... tgcatggcagGAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTA
EST: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAG GAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTAEST: gi|29655797|gb|CB652072.1|CB652072
genomic: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAGgtaatgactg ... tgcatggcagGAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTA
EST: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAG GAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTAEST: gi|29630236|gb|CB635245.1|CB635245
genomic: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAGgtaatgactg ... tgcatggcagGAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTA
EST: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAG GAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTAEST: gi|29666893|gb|CB663168.1|CB663168
genomic: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAGgtaatgactg ... tgcatggcagGAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTA
EST: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAG GAAGTTCCAATCCCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTAEST: gi|29630208|gb|CB635217.1|CB635217
genomic: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAGgtaatgactg ... tgcatggcagGAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTA
EST: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAG GAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTA
genomic: TGACAAAGTGTCATGCGGACTAGCTCTGTATATTCTTGAGTCCTATCAAGgtaatgactg ... tgcatggcagGAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTA
aaatttgggatggtacttttacagtatgctgagagtttgaaactttgcatggcagGAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTACAAGACTTGGTTTGGGGTTAGTCCCAGCTGCCTGTTCACTGCTCTCAGC
tactttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgactgttactattatcatggcactgatacatcaaaaaaatttgggatggtacttttacagtatgctgagagtttgaaactttgcatggcagGAAGTACCAATACCAGACAGAACCTAGAGTTGGCATTTGGTTATTCAGTTACAAGACTTGGTTTGGGGTTAGTCCCAGCTGCCTGTTCACTGCTCTCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC