1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtattgtgattttgtttaatctaacccagatttgtgttaccatgtaataatatagtgaaacatatggacaccactccagGTCTACGAGACGATGGAAGCCATAGTAACTCACCCTGAAGAAACTCTTCAGATAATGGAGGCACCTGATGAAAAGTCCCCCCTTGAGAGTAAAAACCGGT
species | Oryza sativa |
transcript | LOC_Os07g32670.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAGAAGCTAGATGAGATATGCAAG GTCTACGAGACGATGGAAGCCATAGTAACTCACCCTGAAGAAACTCTTCAGEST: gi|55409576|gb|CV721952.1|CV721952
genomic: GAGAAGCTAGATGAGATATGCAAGgtattgtgat ... accactccagGTCTACGAGACGATGGAAGCCATAGTAACTCACCCTGAAGAAACTCTTCAG
EST: GCATTTACCAAGATGACATATCAAAAGAGAAGCTAGATGAGATATGCAAG GTCTACGAGACGATGGAAGCCATAGTAACTCACCCTGAAGAAACTCTTCAGEST: gi|86478175|gb|CI120808.1|CI120808
genomic: GCATTTACCAAGATGACATATCAAAAGAGAAGCTAGATGAGATATGCAAGgtattgtgat ... accactccagGTCTACGAGACGATGGAAGCCATAGTAACTCACCCTGAAGAAACTCTTCAG
EST: GATGACATATCAAAAGAGAAGCTAGATGAGATATGCAAG GTCTACGAGACGATGGAAGCCATAGTAACTCACCCTGAAGAAACTCTTCAGEST: gi|86494173|gb|CI136806.1|CI136806
genomic: GATGACATATCAAAAGAGAAGCTAGATGAGATATGCAAGgtattgtgat ... accactccagGTCTACGAGACGATGGAAGCCATAGTAACTCACCCTGAAGAAACTCTTCAG
EST: GCATTTACCAAGATGACATATCAAAAGAGAAGCTAGATGAGATATGCAAG GTCTACNGAGACGATGGAAGCCNATAGTAACTCACCCCTGAAGAAACTCTT
genomic: GCATTTACCAAGATGACATATCAAAAGAGAAGCTAGATGAGATATGCAAGgtattgtgat ... accactccagGTCTAC-GAGACGATGGAAGCC-ATAGTAACTCA-CCCTGAAGAAACTCTT
cccagatttgtgttaccatgtaataatatagtgaaacatatggacaccactccagGTCTACGAGACGATGGAAGCCATAGTAACTCACCCTGAAGAAACTCTTCAGATAATGGAGGCACCTGATGAAAAGTCCCCCCTTGAGAGTAAAAACCGGT
ccactcc CT-rich tract
taataatatagtgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtgattttgtttaatctaacccagatttgtgttaccatgtaataatatagtgaaacatatggacaccactccagGTCTACGAGACGATGGAAGCCATAGTAACTCACCCTGAAGAAACTCTTCAGATAATGGAGGCACCTGATGAAAAGTCCCCCCTTGAGAGTAAAAACCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG