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gtatgagctgcaacctgtgcattctcttatgttcattcatcatcattagactacaatattgattttcaaattgtttcagGCAACGGCGGCATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAG
species | Oryza sativa |
transcript | LOC_Os07g31460.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TCTGTTCAGGTTCTGTCCTTGCAAGTGGTGAACAACTCCCAATTGGAATT GCAACGGCGGCATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATEST: gi|29616585|gb|CB621597.1|CB621597
genomic: TCTGTTCAGGTTCTGTCCTTGCAAGTGGTGAACAACTCCCAATTGGAATTgtatgagctg ... attgtttcagGCAACGGCGGCATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGAT
EST: TCTGTTCAGGTTCTGTCCTTGCAAGTGGTGAACAACTCCCAATTGGAATT GCAACGGCGGCATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATEST: gi|29624539|gb|CB629550.1|CB629550
genomic: TCTGTTCAGGTTCTGTCCTTGCAAGTGGTGAACAACTCCCAATTGGAATTgtatgagctg ... attgtttcagGCAACGGCGGCATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGAT
EST: TCTGTTCAGGTTCTGTCCTTGCAAGTGGTGAACAACTCCCAATTGGAATT GCAACGGCGGCATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATEST: gi|27548254|gb|CA766230.2|CA766230
genomic: TCTGTTCAGGTTCTGTCCTTGCAAGTGGTGAACAACTCCCAATTGGAATTgtatgagctg ... attgtttcagGCAACGGCGGCATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGAT
EST: TCTGTTNAGGTTCTGTCCTTGCAAGTGGTGAACAACTCCCAATTGGAATT GCAACGGCGGCATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATEST: gi|29681352|gb|CB677627.1|CB677627
genomic: TCTGTTCAGGTTCTGTCCTTGCAAGTGGTGAACAACTCCCAATTGGAATTgtatgagctg ... attgtttcagGCAACGGCGGCATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGAT
EST: TCTGTTCAGGTTCTGTCCTTGCAAGTGGTGAACAACTCCCAATTGGAATT GCAACGGCGGCATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGAT
genomic: TCTGTTCAGGTTCTGTCCTTGCAAGTGGTGAACAACTCCCAATTGGAATTgtatgagctg ... attgtttcagGCAACGGCGGCATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGAT
tcttatgttcattcatcatcattagactacaatattgattttcaaattgtttcagGCAACGGCGGCATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAG
tattgat putative branch site (score: 10)
ttgtttc putative PPT
aatattgattttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgagctgcaacctgtgcattctcttatgttcattcatcatcattagactacaatattgattttcaaattgtttcagGCAACGGCGGCATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA