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gttcgttagcttactcctttgcacttcttttgtatttctgtacactttgcagtgtggtcttggtgtcaagtagaagtaaacacaaagagtttggacatgggtactgtagtaatttatatcttccatgttctataggaagaattttgaaccagttttggaattggtacttgtatacagGTTGGGCTGTTGTATGATGAGGAATCACTGCAAAGTATTTCGGACATGACCTCTGATTGGACAAATGAAGAAAGAGAAATGCTAAGGCGAAAG
species | Oryza sativa |
transcript | LOC_Os07g27790.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCTTTGCCAGCATTTTGG GTTGGGCTGTTGTATGATGAGGAATCACTGCAAAGTATTTCGGACATGACCEST: gi|29682925|gb|CB679200.1|CB679200
genomic: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCTTTGCCAGCATTTTGGgttcgttagc ... ttgtatacagGTTGGGCTGTTGTATGATGAGGAATCACTGCAAAGTATTTCGGACATGACC
EST: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCTTTGCCAGCATTTTGG GTTGGGCTGTTGTATGATGAGGAATCACTGCAAAGTATTTCGGACATGACCEST: gi|572041|gb|D41552.1|D41552
genomic: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCTTTGCCAGCATTTTGGgttcgttagc ... ttgtatacagGTTGGGCTGTTGTATGATGAGGAATCACTGCAAAGTATTTCGGACATGACC
EST: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCTTTGCCAGCATTTTGG GTTGGGCTGTTGTATGATGAGGAATCACTGCAAAGTATTTCGGACATGACCEST: gi|218493685|gb|FG958530.1|FG958530
genomic: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCTTTGCCAGCATTTTGGgttcgttagc ... ttgtatacagGTTGGGCTGTTGTATGATGAGGAATCACTGCAAAGTATTTCGGACATGACC
EST: ATGGTGGCCCATGGAGGAGATTGTGTGCTTTGCCAGCATTTTGG GTTGGGCTGTTGTATGATGAGGAATCACTGCAAAGTATTTCGGACATGACCEST: gi|58663350|gb|CK052036.1|CK052036
genomic: ATGGTGGCCCATGGAGGAGATTGTGTGCTTTGCCAGCATTTTGGgttcgttagc ... ttgtatacagGTTGGGCTGTTGTATGATGAGGAATCACTGCAAAGTATTTCGGACATGACC
EST: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCTTTGCCAGCATTTTGG GTTGGGCTGTTGTATGATGAGGAATCACTGCAAAGTATTTCGGACATGACC
genomic: GTGCTGATGGTGGCCCATGGAGGAGATTGTGTGCTTTGCCAGCATTTTGGgttcgttagc ... ttgtatacagGTTGGGCTGTTGTATGATGAGGAATCACTGCAAAGTATTTCGGACATGACC
ccatgttctataggaagaattttgaaccagttttggaattggtacttgtatacagGTTGGGCTGTTGTATGATGAGGAATCACTGCAAAGTATTTCGGACATGACCTCTGATTGGACAAATGAAGAAAGAGAAATGCTAAGGCGAAAG
aagaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgttagcttactcctttgcacttcttttgtatttctgtacactttgcagtgtggtcttggtgtcaagtagaagtaaacacaaagagtttggacatgggtactgtagtaatttatatcttccatgttctataggaagaattttgaaccagttttggaattggtacttgtatacagGTTGGGCTGTTGTATGATGAGGAATCACTGCAAAGTATTTCGGACATGACCTCTGATTGGACAAATGAAGAAAGAGAAATGCTAAGGCGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA