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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccgggtagtattacttaaaatatgacttccttttaagttagcagcttgtctttctccttgcttaccatctactttattgatcagGCTGTGTCAACTGTAGAGTGGCATTTCAAGGGAGACTATTTCACCACAGTTGTGCCAAGTG

Basic information

species Oryza sativa
transcript LOC_Os07g25440.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88354185|gb|CI637751.1|CI637751
EST:     GTGGGTCAAGCCATGAAAAATTCGATGGAATCGTGTTGATTCATCATAAG                         GCTGTGTCAACTGTACAGTGGCATTTCAAGGGAGACTATTTCACCACAGTT
genomic: GTGGGTCAAGC-ATGAAAAATTTGATGGAATCATGTTGATTCATCATAAGgtaaccgggt ... tattgatcagGCTGTGTCAACTGTAGAGTGGCATTTCAAGGGAGACTATTTCACCACAGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttaagttagcagcttgtctttctccttgcttaccatctactttattgatcagGCTGTGTCAACTGTAGAGTGGCATTTCAAGGGAGACTATTTCACCACAGTTGTGCCAAGTG
                             tgcttac  putative branch site (score: 2)
                   tctttctccttgctta  CT-rich tract
                                        tactttatt  TA-rich tract