1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtatgttgaatgctaattgtgttattaaatcactatattttgtaggaaacatatgtgatggatcaccttcaaagtccatctctctggattttgtagcttttcttttaaaagtagttctttttttttaatctaatgcagGTTGCGAGGGGAACTGAATCCATTGCAGGAGTCCTCCGGTGGTAAGAAGATATCTATTAATGATCTAGTTATAAAG
species | Oryza sativa |
transcript | LOC_Os07g22720.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATTCCACATTATTACCTGACAGTTGACACACGTGTTGATAATCTCATCAA GTTGCGAGGGGAACTGAATCCATTGCAGGAGTCCTCCGGTGGTAAGAAGATEST: gi|58652754|gb|CK041434.1|CK041434
genomic: ATTCCACATTATTACCTGACAGTTGACACACGTGTTGATAATCTCATCAAgtatgttgaa ... tctaatgcagGTTGCGAGGGGAACTGAATCCATTGCAGGAGTCCTCCGGTGGTAAGAAGAT
EST: ATTCCACATTATTACCTGACAGTTGACACACGTGTTGATAATCTCATCAA GTTGCGAGGGGAACTGAATCCATTGCAGGAGTCCTCCGGTGGTAAGAAGATEST: gi|55410697|gb|CV723073.1|CV723073
genomic: ATTCCACATTATTACCTGACAGTTGACACACGTGTTGATAATCTCATCAAgtatgttgaa ... tctaatgcagGTTGCGAGGGGAACTGAATCCATTGCAGGAGTCCTCCGGTGGTAAGAAGAT
EST: ATTCCACATTATTACCTGACAGTTGACACACGTGTTGATAATCTCATCAA GTTGCGAGGGGAACTGAATCCATTGCAGGAGTCCTCCGGTGGTAAGAAGAT
genomic: ATTCCACATTATTACCTGACAGTTGACACACGTGTTGATAATCTCATCAAgtatgttgaa ... tctaatgcagGTTGCGAGGGGAACTGAATCCATTGCAGGAGTCCTCCGGTGGTAAGAAGAT
ctggattttgtagcttttcttttaaaagtagttctttttttttaatctaatgcagGTTGCGAGGGGAACTGAATCCATTGCAGGAGTCCTCCGGTGGTAAGAAGATATCTATTAATGATCTAGTTATAAAG
atctaat putative branch site (score: 33)
ttctttttttttaatc CT-rich tract
ttttcttttaaaagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgaatgctaattgtgttattaaatcactatattttgtaggaaacatatgtgatggatcaccttcaaagtccatctctctggattttgtagcttttcttttaaaagtagttctttttttttaatctaatgcagGTTGCGAGGGGAACTGAATCCATTGCAGGAGTCCTCCGGTGGTAAGAAGATATCTATTAATGATCTAGTTATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG