1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtttgtcttctattctaatgtccactaattgctgtagttatatatgcgagggataatagaactgagtttttatctgtttcagTACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGATGAAGCCAGGGCAGAAGGACATCTTTTACATTACCGGAAGCAGCAAGGAA
species | Oryza sativa |
transcript | LOC_Os06g50300.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAG TACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGATEST: gi|87016979|gb|CI286115.1|CI286115
genomic: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAGgtttgtcttc ... tctgtttcagTACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGAT
EST: GAAGACGCAACTAACAGGAACCGTCTCGCAAAGCTTCTGAGATTTGAAAG TACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGATEST: gi|58684599|gb|CK073286.1|CK073286
genomic: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAGgtttgtcttc ... tctgtttcagTACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGAT
EST: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAG TACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGATEST: gi|32947910|gb|BP184482.1|BP184482
genomic: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAGgtttgtcttc ... tctgtttcagTACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGAT
EST: AAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAG TACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGATEST: gi|33800491|gb|CF326115.1|CF326115
genomic: AAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAGgtttgtcttc ... tctgtttcagTACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGAT
EST: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAG TACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGATEST: gi|58685726|gb|CK074413.1|CK074413
genomic: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAGgtttgtcttc ... tctgtttcagTACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGAT
EST: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAG TACCAAGTCGGAAGGCAAACTTGCCTCTCEST: gi|58689260|gb|CK077947.1|CK077947
genomic: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAGgtttgtcttc ... tctgtttcagTACCAAGTCGGAAGGCAAACTTGCCTCTC
EST: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAG TACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGATEST: gi|29627895|gb|CB632906.1|CB632906
genomic: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAGgtttgtcttc ... tctgtttcagTACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGAT
EST: GAAGATGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAG TACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGATEST: gi|14192100|gb|AU184311.1|AU184311
genomic: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAGgtttgtcttc ... tctgtttcagTACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGAT
EST: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAG TACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGATEST: gi|55410371|gb|CV722747.1|CV722747
genomic: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAGgtttgtcttc ... tctgtttcagTACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGAT
EST: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAG TACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGATEST: gi|29659228|gb|CB655503.1|CB655503
genomic: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAGgtttgtcttc ... tctgtttcagTACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGAT
EST: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAG TACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGAT
genomic: GAAGACGCAACTAACAGGAACCGTCTTGCAAAGCTTCTGAGATTTGAAAGgtttgtcttc ... tctgtttcagTACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGAT
attgctgtagttatatatgcgagggataatagaactgagtttttatctgtttcagTACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGATGAAGCCAGGGCAGAAGGACATCTTTTACATTACCGGAAGCAGCAAGGAA
cactaat putative branch site (score: 124)
tttttatctgtttc putative PPT
tagttatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtcttctattctaatgtccactaattgctgtagttatatatgcgagggataatagaactgagtttttatctgtttcagTACCAAGTCGGAAGGCAAACTTGCCTCTCTTGATGAGTACATTTCAAGGATGAAGCCAGGGCAGAAGGACATCTTTTACATTACCGGAAGCAGCAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA