1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cacacatatacctctgcttgttttctaattaatctcaagagtgttgggctttgatatgggcctctcacaatctcgggctttgttaaaattaatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCGACGAAGAGAAGGTGATGATGGAGTCGCTCATGTGCCTGAGGCGAGCCG
species | Oryza sativa |
transcript | LOC_Os06g49110.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88956575|gb|CI092792.1|CI092792
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTNAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88971045|gb|CI387106.1|CI387106
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88961091|gb|CI096494.1|CI096494
genomic: TTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: GCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29685228|gb|CB681503.1|CB681503
genomic: GCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|313079584|gb|HO213142.1|HO213142
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTEST: gi|86887360|gb|CI313263.1|CI313263
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGT
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29645009|gb|CB650016.1|CB650016
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|86482891|gb|CI125524.1|CI125524
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: ATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29619412|gb|CB624424.1|CB624424
genomic: ATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29624059|gb|CB629070.1|CB629070
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29624058|gb|CB629069.1|CB629069
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATEST: gi|86484400|gb|CI127033.1|CI127033
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGAT
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29645159|gb|CB650166.1|CB650166
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29661435|gb|CB657710.1|CB657710
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29617547|gb|CB622559.1|CB622559
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29629261|gb|CB634272.1|CB634272
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29624061|gb|CB629072.1|CB629072
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|86536175|gb|CI176381.1|CI176381
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|89178910|gb|CI391908.1|CI391908
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29615587|gb|CB620599.1|CB620599
genomic: TTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29641825|gb|CB646832.1|CB646832
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88245599|gb|CI245448.1|CI245448
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACTATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGGACATGATCEST: gi|29624057|gb|CB629068.1|CB629068
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88251932|gb|CI349169.1|CI349169
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: ACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88247732|gb|CI247581.1|CI247581
genomic: ACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|86842125|gb|CI338471.1|CI338471
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTCCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|87030788|gb|CI362002.1|CI362002
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCAGCA-TGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|86874617|gb|CI318176.1|CI318176
genomic: TCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCA-TGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29619109|gb|CB624121.1|CB624121
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|86836906|gb|CI347481.1|CI347481
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|86841162|gb|CI342914.1|CI342914
genomic: TCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: CATCCCTCTTCTTAGGCACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29619316|gb|CB624328.1|CB624328
genomic: CATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88294931|gb|CI522885.1|CI522885
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|27577435|gb|CB000130.1|CB000130
genomic: TCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|44669277|gb|CR282711.1|CR282711
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: CCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88991676|gb|CI019854.1|CI019854
genomic: CCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29660274|gb|CB656549.1|CB656549
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88524087|gb|CI451973.1|CI451973
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: AATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|38471437|gb|CF955568.1|CF955568
genomic: AATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|33680655|gb|CF308894.1|CF308894
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88437833|gb|CI533790.1|CI533790
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: CCAATCNCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGGTGGAGGAGCACTGAACATGATCEST: gi|29621570|gb|CB626581.1|CB626581
genomic: CCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88251358|gb|CI349786.1|CI349786
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: CGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29688150|gb|CB684425.1|CB684425
genomic: CGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|86870512|gb|CI320608.1|CI320608
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|15852419|gb|BI805215.1|BI805215
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCGATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88907517|gb|CI090311.1|CI090311
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|8858787|gb|AU096105.1|AU096105
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|25806864|gb|CA762825.1|CA762825
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88974531|gb|CI022072.1|CI022072
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88226022|gb|CI225938.1|CI225938
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29684916|gb|CB681191.1|CB681191
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|86433687|gb|CI094030.1|CI094030
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88264552|gb|CI368326.1|CI368326
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTA-GGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29666982|gb|CB663257.1|CB663257
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTTTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|8528033|gb|AU092848.1|AU092848
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88956530|gb|CI092762.1|CI092762
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29688149|gb|CB684424.1|CB684424
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29624056|gb|CB629067.1|CB629067
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|86251556|gb|CI016845.1|CI016845
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88906969|gb|CI376041.1|CI376041
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTCCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29616371|gb|CB621383.1|CB621383
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|86869618|gb|CI322104.1|CI322104
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATEST: gi|86434303|gb|CI094646.1|CI094646
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCA-Ggttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGAT
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29660428|gb|CB656703.1|CB656703
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|88971764|gb|CI389001.1|CI389001
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCAGCATTCCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAACACTGAACATGATCEST: gi|88202644|gb|CI200999.1|CI200999
genomic: TCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|86493942|gb|CI136575.1|CI136575
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|396941280|gb|HO188489.1|HO188489
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29655803|gb|CB652078.1|CB652078
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|15856703|gb|BI809515.1|BI809515
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: ACAATTCAGCATT-CCAATC-CTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGA-CACCTGAACATGATEST: gi|86487691|gb|CI130324.1|CI130324
genomic: ACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCA-CTGAACATGAT
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29688151|gb|CB684426.1|CB684426
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29679003|gb|CB675278.1|CB675278
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29629260|gb|CB634271.1|CB634271
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|29672091|gb|CB668366.1|CB668366
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCEST: gi|86884778|gb|CI314354.1|CI314354
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCC-TCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTG-ACATGATCEST: gi|89175231|gb|CI111750.1|CI111750
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: CTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGC-CTGAACATGATCEST: gi|29613358|gb|CB618371.1|CB618371
genomic: CTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
gggctttgatatgggcctctcacaatctcgggctttgttaaaattaatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCGACGAAGAGAAGGTGATGATGGAGTCGCTCATGTGCCTGAGGCGAGCCG
aattaat putative branch site (score: 33)
tttgttaaaattaatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacacatatacctctgcttgttttctaattaatctcaagagtgttgggctttgatatgggcctctcacaatctcgggctttgttaaaattaatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCGACGAAGAGAAGGTGATGATGGAGTCGCTCATGTGCCTGAGGCGAGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
-acacata
- - - - - - -ctgcttg