1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ctgtttcacattttaagtgtcatacagacttttagaattgttgtttctgctattatggcttgtctgagcttatgttctattcattgatttggatacatagGCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAG
species | Oryza sativa |
transcript | LOC_Os06g36770.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTGGGAGCGAGGGA-GCGACCACTTTGGAGGCAAGCAGAAACCCCATGAG GCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGCEST: gi|86483283|gb|CI125916.1|CI125916
genomic: CTGGGAGC-ACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAGgtatgtttac ... ggatacatagGCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGC
EST: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAG GCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGCEST: gi|58675521|gb|CK064208.1|CK064208
genomic: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAGgtatgtttac ... ggatacatagGCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGC
EST: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAG GCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGCEST: gi|66913089|gb|CX099937.1|CX099937
genomic: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAGgtatgtttac ... ggatacatagGCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGC
EST: CTGGGAGCACAGAAGCGACCACTTTGGAGGGCAAGCAGAAACCCCATGAG GCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGCEST: gi|29630757|gb|CB635766.1|CB635766
genomic: CTGGGAGCACAGAAGCGACCACTTTGGA-GGCAAGCAGAAACCCCATGAGgtatgtttac ... ggatacatagGCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGC
EST: GGAGCACAGAAGCGACCCCTTTGGAGGCAAGCAGAAACCCCATGAG GCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTTTGGCEST: gi|29627088|gb|CB632099.1|CB632099
genomic: GGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAGgtatgtttac ... ggatacatagGCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGC
EST: TTTGGGGGCAAGCAGAACCCCCATGAG GCGTCAGATTGTAAACCCAACAAGGCCCCCACGCACACTAACCTCTCTGGCEST: gi|218501369|gb|FG965487.1|FG965487
genomic: TTTGGAGGCAAGCAGAAACCCCATGAGgtatgtttac ... ggatacatagGCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGC
EST: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAG GCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGCEST: gi|58658882|gb|CK047562.1|CK047562
genomic: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAGgtatgtttac ... ggatacatagGCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGC
EST: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAG GCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGCEST: gi|88411135|gb|CI606354.1|CI606354
genomic: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAGgtatgtttac ... ggatacatagGCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGC
EST: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAG GCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGCEST: gi|58593657|gb|CF991965.1|CF991965
genomic: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAGgtatgtttac ... ggatacatagGCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGC
EST: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAG GCGTCAGATTGTAAACCCAACAAGEST: gi|29683055|gb|CB679330.1|CB679330
genomic: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAGgtatgtttac ... ggatacatagGCGTCAGATTGTAAACCCAACAAG
EST: TTGGAGGCAAGCAGAAACCCCATGAG GCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGCEST: gi|58674786|gb|CK063473.1|CK063473
genomic: TTGGAGGCAAGCAGAAACCCCATGAGgtatgtttac ... ggatacatagGCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGC
EST: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAG GCGTCAGATTGTAAACCCAACAAGGCCCACACGCACAEST: gi|29622204|gb|CB627215.1|CB627215
genomic: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAGgtatgtttac ... ggatacatagGCGTCAGATTGTAAACCCAACAAGGCCCACACGCACA
EST: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAG GCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGCEST: gi|29644040|gb|CB649047.1|CB649047
genomic: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAGgtatgtttac ... ggatacatagGCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGC
EST: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAG GCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGC
genomic: CCTGGGAGCACAGAAGCGACCACTTTGGAGGCAAGCAGAAACCCCATGAGgtatgtttac ... ggatacatagGCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGC
tctgctattatggcttgtctgagcttatgttctattcattgatttggatacatagGCGTCAGATTGTAAACCCAACAAGGCCCACACGCACACTAACCTCTCTGGCCCGTGGTGTGCGGAGAG
cattgat putative branch site (score: 4)
tattcatt TA-rich tract