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...tactgggctctacctttgaacatgcaccaagtagtacttagagaagtaattgtatttgcattactttttgttacctgtttctaaatgtctgttttttcagCATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAG
species | Oryza sativa |
transcript | LOC_Os06g34690.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGTGGGTTGAATGTCATCAGGATAATGACACAACTCCAGGGAAAG CATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGACEST: gi|8527364|gb|AU092179.1|AU092179
genomic: TGTGGGTTGAATGTCATCAGGATAATGACACAACTCCAGGGAAAGgtaataatta ... gttttttcagCATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGAC
EST: AATTGTGGNTTGAATGTCATCAGGATAATGACACAACTCCAGNGAAAG CATGCAAATGGTGAAAATGCGTGGNTTGGCATTGACGGAAGGAGCGGTGACEST: gi|8527533|gb|AU092348.1|AU092348
genomic: AATTGTGGGTTGAATGTCATCAGGATAATGACACAACTCCAGGGAAAGgtaataatta ... gttttttcagCATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGAC
EST: ATCAGGATATTGACACAACTCCAGGNAAAG CATGCAAATGGTGAAAATGCGTGGNTTGGCATTGACGGAAGGANCGGTGACEST: gi|218482787|gb|FG945649.1|FG945649
genomic: ATCAGGATAATGACACAACTCCAGGGAAAGgtaataatta ... gttttttcagCATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGAC
EST: AAAATTGTGGGTTGAATGTCATCAGGATAATGACACAACTCCAGGGAAAG CATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGACEST: gi|218478282|gb|FG948232.1|FG948232
genomic: AAAATTGTGGGTTGAATGTCATCAGGATAATGACACAACTCCAGGGAAAGgtaataatta ... gttttttcagCATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGAC
EST: AAAATTGTGGGTTGAATGTCATCAGGATAATGACACAACTCCAGGGAAAG CATGCAAATGGTGAAAATGCGTGGGTTGGEST: gi|27576407|gb|CA999101.1|CA999101
genomic: AAAATTGTGGGTTGAATGTCATCAGGATAATGACACAACTCCAGGGAAAGgtaataatta ... gttttttcagCATGCAAATGGTGAAAATGCGTGGGTTGG
EST: AAAATTGTGGGTTGAATGTCATCAGGATAATGACACAACTCCAGGGAAAG CATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGACEST: gi|29661338|gb|CB657613.1|CB657613
genomic: AAAATTGTGGGTTGAATGTCATCAGGATAATGACACAACTCCAGGGAAAGgtaataatta ... gttttttcagCATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGAC
EST: AAAATTGTGGGTTGAATGTCATCAGGATAATGACACAACTCCAGGGAAAG CATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGACEST: gi|218479881|gb|FG966071.1|FG966071
genomic: AAAATTGTGGGTTGAATGTCATCAGGATAATGACACAACTCCAGGGAAAGgtaataatta ... gttttttcagCATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGAC
EST: AAAATTGTGGGTTGAATGTCATCAGGATAATGACACAACTCCCGGGAAAG CATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGACEST: gi|25806437|gb|CA762398.1|CA762398
genomic: AAAATTGTGGGTTGAATGTCATCAGGATAATGACACAACTCCAGGGAAAGgtaataatta ... gttttttcagCATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGAC
EST: AAAATTGTGGGTTGAATGTCATCAGGATAATGACACAACTCCAGGGAAAG CATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGAC
genomic: AAAATTGTGGGTTGAATGTCATCAGGATAATGACACAACTCCAGGGAAAGgtaataatta ... gttttttcagCATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGAC
gtaattgtatttgcattactttttgttacctgtttctaaatgtctgttttttcagCATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAG
ttctaaa putative branch site (score: 55)
tctgttttttc putative PPT
attactttttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactgggctctacctttgaacatgcaccaagtagtacttagagaagtaattgtatttgcattactttttgttacctgtttctaaatgtctgttttttcagCATGCAAATGGTGAAAATGCGTGGGTTGGCATTGACGGAAGGAGCGGTGACATTGTTGACATGAAAGAGCGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -atttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttct