1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...ttccattatttatattttgtaaagataagataattttatggctacacagttacactatggaatgttgagccttgtcaattttttttaacaatactggcagAATGGAAAGGCAACGCCGTGAGGATGAATTAAAAAATCGATCCTCCAAGAAACCACAGGATGCTGACCAACCCATGGGAAAAAGG
species | Oryza sativa |
transcript | LOC_Os06g13820.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAGCGCGCCTTTGTTCCTCCTCAGCATTTCATCCGTCTAGTGCAAAGAAG AATGGAAAGGCAACGCCGTGAGGATGAATTAAAAAATCGATCCTCCAAGAAEST: gi|88405106|gb|CI685555.1|CI685555
genomic: GAGCGCGCCTTTGTTCCTCCTCAGCATTTCATCCGTCTAGTGCAAAGAAGgttgattttt ... atactggcagAATGGAAAGGCAACGCCGTGAGGATGAATTAAAAAATCGATCCTCCAAGAA
EST: GAGCGCGCCTTTGTTCCTCCTCAGCATTTCATCCGTCTAGTGCAAAGAAG AATGGAAAGGCAACGCCGTGAGGATGAATTAAAAAATCGATCCTCCAAGAAEST: gi|29622847|gb|CB627858.1|CB627858
genomic: GAGCGCGCCTTTGTTCCTCCTCAGCATTTCATCCGTCTAGTGCAAAGAAGgttgattttt ... atactggcagAATGGAAAGGCAACGCCGTGAGGATGAATTAAAAAATCGATCCTCCAAGAA
EST: GAGCGCGCCTTTGTTCCTCCTCAGCATTTCATCCGTCTAGTGCAAAGAAG AATGGAAAGGCAACGCCGTGAGGATGAATTAAAAAATCGATCCTCCAAGAAEST: gi|58668422|gb|CK057108.1|CK057108
genomic: GAGCGCGCCTTTGTTCCTCCTCAGCATTTCATCCGTCTAGTGCAAAGAAGgttgattttt ... atactggcagAATGGAAAGGCAACGCCGTGAGGATGAATTAAAAAATCGATCCTCCAAGAA
EST: GAGCGCGCCTTTGTTCCTCCTCAGCATTTCATCCGTCTAGTGCAAAGAAG AATGGAAAGGCAACGCCGTGAGGATGAATTAACAAATCGATCCTCCAAGAA
genomic: GAGCGCGCCTTTGTTCCTCCTCAGCATTTCATCCGTCTAGTGCAAAGAAGgttgattttt ... atactggcagAATGGAAAGGCAACGCCGTGAGGATGAATTAAAAAATCGATCCTCCAAGAA
acagttacactatggaatgttgagccttgtcaattttttttaacaatactggcagAATGGAAAGGCAACGCCGTGAGGATGAATTAAAAAATCGATCCTCCAAGAAACCACAGGATGCTGACCAACCCATGGGAAAAAGG
ttttaac putative branch site (score: 2)
ttgtcaatttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccattatttatattttgtaaagataagataattttatggctacacagttacactatggaatgttgagccttgtcaattttttttaacaatactggcagAATGGAAAGGCAACGCCGTGAGGATGAATTAAAAAATCGATCCTCCAAGAAACCACAGGATGCTGACCAACCCATGGGAAAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG