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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcacactatagttccctgtcacttgttggatacccagattggaacctaagaacgggctttgtggaagtgatgtttgcagcatgtttgtttacgaaccagcgcaggcagatgaacttctaatgatatgatcatgctcttatgtttgtatttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG

Basic information

species Oryza sativa
transcript LOC_Os06g13810.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g13810.1 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G059151_T01 (Zea mays), 3'ss of exon 12
gtatgcacactatagttccctgtcacttgttggatacccagattggaacctaagaacgggctttgtggaagtgatgtttgcagcatgtttgtttacgaaccagcg--caggcagatgaacttctaatgatatgatcatgctcttatgtttgtatttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG
                                                                |||  ||  ||   ||    || | |  | | |     | |      |  ||| ||||  | |||| | |||  ||| |  | ||| | | ||  |||||||||||||||| || ||||| || ||||||||||| ||||||||||| ||||| |||||  ||||||||||||||||||||||||
-------------------------------------------------------------acagtgttaggaatacctgggagatatcttataatgtgtttgtgactgatcttatgtacttgca-tgatttaatc--gctgtcttttttttttcttggctcagGTTGGCAACCTTGCGGCTCCAGTTGAAGAATGGACTGTTGGTGGAACAGCATTAACATCACTGATGGATGTTGAGAGGAGGCACG

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G143862_T01 (Zea mays), 3'ss of exon 5
gtatgcacactatagttccctgtcacttgttggatacccagattggaacctaagaacgggctttgtggaagtgatgtttgcagcatgtttgtttacgaaccagcgcaggcagatgaacttctaatgatatgatcatgctcttatgtttgtatttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG
                                                       ||   |  | |       || |  |     | ||   ||  ||    |      |  ||| ||||  | |||| || ||    ||||   |||   | ||| || ||||||||||||| || ||||| || ||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||
-------------------------------------------------------acctacagtattaggagcatctgggagatgtcttatattgtgattgtggctgatcgtatgtacttgca-tgatttggtcgctgtctt---ttt---tctttgcttagGTTGGCAACCTTGCGGCTCCAGTAGAAGAATGGACTGTTGGTGGAACAGCATTGACATCACTGATGGATGTTGAGAGGAGGCACG

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 3'ss of exon 12
lower sequence: GLYMA07G39380.2 (Glycine max), 3'ss of exon 12
gtatgcacactatagttccctgtcacttgttggatacccagattggaa----cctaagaacgggctttgtggaagtgatgtt-tgcagcatgtttgtttacgaaccagcgcaggcagatgaacttctaatgatatgatcatgctcttatgtttgtatttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG
|| ||  | ||||  |   |      |  |   ||   || ||| ||     | |    |  || |||   ||     |||  | ||  ||||||| | |   ||  |  |   ||  | || || |       ||||  |||| | || ||       ||  ||||||||| ||  |   ||||||||| ||||||||||| ||||||||||||||| | || || |||||||| || |||||||| || |
gtttgtgc-ctatgctcttcacattatcttctaatcatcaaattagatatttcttctagattggttttaatgattgattgtggttcaaaatgtttggtaat--actgggtccatcaactcaattttt-------tgatt-tgctatgatatt-------ttgatcagGTTGGTAATTTATGTGCTCCTGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACTTCATTGATGGACGTGGAGAGGAGACATG

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 3'ss of exon 12
lower sequence: GLYMA15G11890.1 (Glycine max), 3'ss of exon 12
--gtatgca-cactatagttccctgtcacttgttggatacccagattggaacctaagaacgggctttgtgg--aagtgatgtttgcagc-atgtttgtttacgaaccagcgcaggcagatgaacttctaatgatatgatcatgctcttatgtttgtatttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG
   | |||  | ||| |   |    ||  ||| |   | |  | ||      |  |||  ||  ||  |     | ||   |||| |    || ||||||  | |  |  | || ||    |||  ||| | || | ||  || | | || |||| ||       ||||||| |||  |   |||||| || ||||||||||| ||||||||||||||| | || ||  |||||||||| ||||||||||| |
gtttgtgcttctctacatgccttaatcttttgatatcttcttaaat--atctcctagattggtgttgataattgattgtactttgaaattgtgcttgttt-tgcaatattgaagtca--ccaac--ctagttatttaatt-tgttttgatatttggat-------cagGTTGCCAATTTATGTGCTCCGGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACCTCACTGATGGATGTGGAGAGGAGGCATG

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 3'ss of exon 12
lower sequence: GLYMA17G01360.1 (Glycine max), 3'ss of exon 10
gtatgcacactatagttccctgtcacttgttggatacccagattggaacctaagaacgggctttgtggaagtgat-gtttgcagcatgtttgtttacgaaccagcgcaggcagatgaacttctaatgatatgatcatgctcttatgtttgtatttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG
|| ||  | | ||  ||| |  |  ||| |   ||   || |||  ||  |     |  | || ||   | |||| |  ||  |         || || |  |  |  | ||  | ||||   |||  |  |||| |||| | || ||| |||       |||||||| ||  |   ||||||||| ||||||||||| ||||||||||||||| | || || |||||||| || |||||||| || |
gtttgtgc-caatgcttctcattatcttctctaatcatcaaatta-aatatttcttctagattggttttaatgattgactgtggttgaaaatgtttcgtaatactggggcca--tcaact--caatttttggatc-tgctatgatatttttat-------cagGTTGGTAATTTGTGTGCTCCTGTAGAAGAATGGACTGTTGGTGGAACTGCACTCACTTCATTGATGGACGTGGAGAGGAGACATG

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 3'ss of exon 12
lower sequence: GLYMA09G01050.1 (Glycine max), 3'ss of exon 12
--gtatgca-cactatagttccctgtcacttgttggatacccagattggaacctaagaacgggctttgtgg--aagtgatgtttgcagc-atgtttgtttacgaaccagcgcaggcagatgaacttctaatgatatgatcatgctcttatgtttgtatttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG
   | |||  | ||| |   |    ||  ||| |   |||  | ||      |  |||  ||  ||  |     | ||   |||| |    |||||||||  | |  |  | || ||    |||  ||| |  | | ||  |||| | |  ||       ||  ||||||||| ||  |   |||||| ||  |||||||||| ||||||||||||||| | || ||  |||||||||| ||||||||||| |
gtttgtgcttctctacatgccttaatcttttgatatctacttaaat--atctcctagattggtattgataattgattgtactttgaaattgtgtttgttt-tgtaatattgaagtca--ccaac--ctagttctttaatt-tgctttgacatt-------ttgatcagGTTGGGAATTTATGTGCTCCAGTAAAAGAATGGACTGTTGGTGGAACTGCACTCACCTCAATGATGGATGTGGAGAGGAGGCATG

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 3'ss of exon 12
lower sequence: AT1G12000.1 (Arabidopsis thaliana), 3'ss of exon 12
gtatgcacactatagttccctgtcacttgttggatacccagattggaacctaagaacgggctttgtggaagtgatgtttgcagcatgtttgtttacgaaccagcgcaggcagatgaacttctaatgatatgatcatgctcttatgtttgtatttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG
                             ||| |  ||   |||   ||   | ||   | |||      |||||  |   ||| |     ||    ||| ||         |||  |||  ||||| ||||            |||    | ||  | |||||||| ||| | ||||||||||||||||||||||| || ||||| |||||  | ||| | ||||||||||| |||||||| ||||
---------------------------gtttgtactccaccatttccact--aaaatctgttttccatctgtgatcataatagcct-----ttggtaaactagt--------atgtgcttagaatgagatga------------gttaacttattggcgcagGTTGGGAACTTGGCTGCTCCTGTGGAAGAATGGACTGTAGGTGGGACTGCTCTCACAGCCTTGATGGATGTCGAGAGGAGACACG

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 3'ss of exon 12
lower sequence: AT4G04040.1 (Arabidopsis thaliana), 3'ss of exon 12
gtatgcacactatagttccctgtcacttgttggatacccagattggaacctaagaacgggctttgtggaagtgatgtttgcagcatgt-ttgtttacgaaccagcgcaggcagatgaacttctaatgatatgatcat--gctcttatgtttgtatttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG
                                                                           ||||  |   | | ||  || |     |       || |     |  | ||   | ||| ||      |    |||||  | ||   |||||||| ||| | ||||||||||| ||||| ||||| |||||||| |||||| |||| |||||||||||||||||||| || || |
---------------------------------------------------------------------------gtttagaatttttcttcctttcttgataatatca-caaactgtttctttatttcaagattatttatattcccctttgtgatgttttgcagGTTGGAAACTTGGCTGCTCCTGTTGAAGAGTGGACAGTTGGTGGTACTGCACTGACTTCGTTGATGGATGTTGAGAGAAGACATG

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 3'ss of exon 12
lower sequence: Vv12s0059g01220.t01 (Vitis vinifera), 3'ss of exon 12
gtatgcacactatagttccctgtcacttgttggatacccagattggaacctaagaacgggctttgtggaagt--gatgtttgcagcatgtttgtttacgaaccagcgcaggcagatgaacttctaatgatatgatcatgctcttatgtttgtatttttact--cagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG
|| ||     | ||      | |    ||||    |      ||   | ||       | |||| ||    |  |    ||  |||||||   |||       || | | | | || ||  | ||| | |    | |  || ||||    ||  |||| ||  ||||| || ||  | | |||||| || ||||||||||| || || ||||| |||||||| || ||||||||||| |||||||| || |
gtttgtgt-ttctatcctttttttttctgttctcaattttattttccatctttttgttgcctttatgtttctttgtaagttcaagcatgtcccttttaactttagtggatgaacatcaaagtttaa-gttgctttaactct-ttattgaagtgattttgcttccagGTGGGAAATTTGGGTGCTCCAGTTGAAGAATGGACAGTGGGAGGAACGGCATTGACTTCTTTGATGGATGTGGAGAGGAGACATG

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 3'ss of exon 12
lower sequence: Vv10s0116g00360.t01 (Vitis vinifera), 3'ss of exon 12
gtatgcacactatagttccctgtcacttgttggatacccagattggaa--cctaagaacgggctttgtggaagtga-----tgtttgcagcatgt---ttgtttacgaaccagcgcaggcagatgaacttctaatgatatgatcatgctcttatgtttgtatttt------tactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG
||  |  |   ||    |    ||| || ||| |      |||  |    |||          |||    |  |       || ||  ||  |      | ||      | | || |||     | | |  |||| |    |  |   | || |  |||| | |       |  ||||||||| || ||  ||||||| || ||||||||||| |||||||||||||| ||||| || || |||||||| |||||||| || |
gttggttcttcattccgcttaatcattt-ttgtactttttgatcagtcttccttttttttcatttttccaatatctcattctgcttatagagttcaaactcttgttattctatcgaaggttatagtagt--taataactgaacaaactttttgtaattgtttctcatcatgtcttcagGTTGGGAATCTGTCTGCTCCAGTTGAAGAATGGACTGTTGGTGGAACTGCCTTGACTTCATTAATGGATGTGGAGAGGAGACATG

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 3'ss of exon 12
lower sequence: EFJ13842 (Selaginella moellendorffii), 3'ss of exon 12
gtatgcacactatagttccctgtcacttgttggatacccagattggaacctaagaacgggctttgtggaagtgatgtttgcagcatgtttgtttacgaaccagcgcaggcagatgaacttctaatgatatgatcatgctcttatgtttgtatttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG
                                                                                                        |   | || |||| | | |   |  | ||  || | | |    ||   |  |   ||||| || ||  |  | ||  ||    |||| ||||| || || || || ||||||||||| |||||||||||||||||  ||   |
--------------------------------------------------------------------------------------------------------gtctgtag-tgaagtaccatccagct-atagtg-tgtgactaatgctctagtttccagGTGGGAAATTTGTCAGCCTCTTCAAAAGACTGGACTGTGGGAGGGACGGCATTGACATCATTGATGGATGTTGAGAGACGGAGAG

upper sequence: LOC_Os06g13810.1 (Oryza sativa), 3'ss of exon 12
lower sequence: EFJ12684 (Selaginella moellendorffii), 3'ss of exon 12
gtatgcacactatagttccctgtcacttgttggatacccagattggaacctaagaacgggctttgtggaagtgatgtttgcagcatgtttgtttacgaaccagcgcaggcagatgaacttctaatgatatgatcatgctcttatgtttgtatttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG
                                                                                                        |   | || |||| | | |   |  | ||  || | |||    ||   |  |   ||||| || ||  |  |  |  ||    |||| |||||||| || || || ||||||||||| |||||||||||||||||  ||   |
--------------------------------------------------------------------------------------------------------gtctgtag-tgaagtaccatccagct-atagtg-tgttactaatgctctagtttccagGTGGGGAATTTGTCAACCTCTTCAAAAGACTGGACCGTGGGAGGGACGGCATTGACATCATTGATGGATGTTGAGAGACGGAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29689204|gb|CB685479.1|CB685479
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCCCTGC
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGC
EST: gi|88248905|gb|CI247989.1|CI247989
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|89180255|gb|CI044534.1|CI044534
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|86255558|gb|CI065235.1|CI065235
EST:     ATGTGGGAAGACAGGACTGAGTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|86488059|gb|CI130692.1|CI130692
EST:     CTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: CTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|88957467|gb|CI095408.1|CI095408
EST:     GGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: GGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|218492354|gb|FG951898.1|FG951898
EST:     GTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: GTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|89179882|gb|CI044161.1|CI044161
EST:     TGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: TGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|58677751|gb|CK066438.1|CK066438
EST:     GGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: GGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|88247475|gb|CI247324.1|CI247324
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|29678699|gb|CB674974.1|CB674974
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|29632620|gb|CB637629.1|CB637629
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGATTGATTACGTCG                         GTTGGCAACCTCGCTGTTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|86435722|gb|CI106955.1|CI106955
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|89194206|gb|CI116643.1|CI116643
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|88205596|gb|CI205445.1|CI205445
EST:     ACTTCTCCAATGTGGGAAGACAGGTCTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGCACTGCA
genomic: ACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|58687019|gb|CK075706.1|CK075706
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|89180424|gb|CI044703.1|CI044703
EST:     GGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: GGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|86261017|gb|CI066692.1|CI066692
EST:     ACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|29689205|gb|CB685480.1|CB685480
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGGTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|58684244|gb|CK072931.1|CK072931
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|88850841|gb|CI096231.1|CI096231
EST:     CCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: CCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|55431802|gb|CV728921.1|CV728921
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|88246487|gb|CI246336.1|CI246336
EST:     ACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|86433428|gb|CI093771.1|CI093771
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|33687066|gb|CF315305.1|CF315305
EST:     ACGGTTCTGGGGCACTTCTCCAATGCGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|88849084|gb|CI087606.1|CI087606
EST:     TTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: TTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|58672321|gb|CK061007.1|CK061007
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|88247683|gb|CI247532.1|CI247532
EST:     GGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: GGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|428916|gb|D25072.1|D25072
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|218497895|gb|FG966087.1|FG966087
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|8527563|gb|AU092378.1|AU092378
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|88197484|gb|CI197186.1|CI197186
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|88249646|gb|CI249495.1|CI249495
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|38481421|gb|CF965510.1|CF965510
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGAGTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|29686237|gb|CB682512.1|CB682512
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|86854109|gb|CI252100.1|CI252100
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|88219371|gb|CI218931.1|CI218931
EST:     ACGCTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|88247174|gb|CI247023.1|CI247023
EST:     AGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCCCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: AGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|89184848|gb|CI048404.1|CI048404
EST:     ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: ACGGTTCTGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
EST: gi|88243281|gb|CI244403.1|CI244403
EST:     TGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCG                         GTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA
genomic: TGGGGCACTTCTCCAATGTGGGAAGACAGGACTGATTACGTCGgtatgcacac ... ttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcagatgaacttctaatgatatgatcatgctcttatgtttgtatttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG
           ttctaat  putative branch site (score: 2)
                                            tttttactc  putative PPT
                                 ttatgtttgtattttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcacactatagttccctgtcacttgttggatacccagattggaacctaagaacgggctttgtggaagtgatgtttgcagcatgtttgtttacgaaccagcgcaggcagatgaacttctaatgatatgatcatgctcttatgtttgtatttttactcagGTTGGCAACCTCGCTGCTCCTGTGGAAGAATGGACCGTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG