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gtaaaattttacatgccatttcagaggatctttgctactcctttgtgagccacatttttgttctgacttctgaatccctgaacctatgacctatctatctctcttcagGTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAAGCAAGATTTCTGCAGAAGAACACACGGAAATGGACCTGCATAGGGATTG
species | Oryza sativa |
transcript | LOC_Os06g07200.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AATATAGAGTCACAG GTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAAEST: gi|86878358|gb|CI319605.1|CI319605
genomic: AATATAGAGTCACAGgtaaaatttt ... ctctcttcagGTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAA
EST: CCGTGTTGGTTGAGGCTC-AGGCGAGATCCTGGACAATATAGAGTCACAG GTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAAEST: gi|88254522|gb|CI353346.1|CI353346
genomic: CCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAGgtaaaatttt ... ctctcttcagGTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAA
EST: CCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAG GTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAAEST: gi|27548906|gb|CA767571.2|CA767571
genomic: CCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAGgtaaaatttt ... ctctcttcagGTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAA
EST: CCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAG GTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAAEST: gi|319908621|gb|HS977749.1|HS977749
genomic: CCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAGgtaaaatttt ... ctctcttcagGTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAA
EST: CCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAG GTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAAEST: gi|89178957|gb|CI043462.1|CI043462
genomic: CCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAGgtaaaatttt ... ctctcttcagGTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAA
EST: CCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAG GTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAAEST: gi|18385545|gb|BM418744.1|BM418744
genomic: CCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAGgtaaaatttt ... ctctcttcagGTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAA
EST: CCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAG GTTTCAGGTGCAGCTGAACATATTCAGACTGGAAC-AACCTCCTCCAGAAAEST: gi|18386037|gb|BM419236.1|BM419236
genomic: CCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAGgtaaaatttt ... ctctcttcagGTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAA
EST: CCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAG GTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAA
genomic: CCGTGTTGGTTGAGGCTCAAGGCGAGATCCTGGACAATATAGAGTCACAGgtaaaatttt ... ctctcttcagGTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAA
atttttgttctgacttctgaatccctgaacctatgacctatctatctctcttcagGTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAAGCAAGATTTCTGCAGAAGAACACACGGAAATGGACCTGCATAGGGATTG
ttctgac putative branch site (score: 11)
cctatctatctctctt putative PPT
tatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaattttacatgccatttcagaggatctttgctactcctttgtgagccacatttttgttctgacttctgaatccctgaacctatgacctatctatctctcttcagGTTTCAGGTGCAGCTGAACATATTCAGACTGGAACAAACCTCCTCCAGAAAGCAAGATTTCTGCAGAAGAACACACGGAAATGGACCTGCATAGGGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC