1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tctcgtgatcttaacaaatcatggaagtgctttctcagataaacatgcatttgtggtctgaaatgcgcatataattatcttactgtctacggccttgcagATCGAGTTTTCTCATGATGGAACATGCCATGGTTTTGCGGTTTGGATTGATTGGGTTCTTGATGAGAGAAAATCCGTTGTGTTAACAACCGGACCAG
species | Oryza sativa |
transcript | LOC_Os06g01640.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGGATTTCAACTTTTCTGAGCCAATCCACTCCTGTTTTGGGAAAACGAAG ATCGAGTTTTCTCATGATGGAACATGCCATGGTTTTGCGGTTTGGATTGATEST: gi|86522915|gb|CI163121.1|CI163121
genomic: TGGATTTCAACTTTTCTGAGCCAATCCACTCCTGTTTTGGGAAAACAAAGgtatattttg ... ggccttgcagATCGAGTTTTCTCATGATGGAACATGCCATGGTTTTGCGGTTTGGATTGAT
EST: TGGATTTCAACTTTTCTGAGCCAATCCACTCCTGTTTTGGGAAAACAAAG ATCGAGTTTTCTCATGATGGAACATGCCATGGTTTTGCGGTTTGGATTGATEST: gi|29626636|gb|CB631647.1|CB631647
genomic: TGGATTTCAACTTTTCTGAGCCAATCCACTCCTGTTTTGGGAAAACAAAGgtatattttg ... ggccttgcagATCGAGTTTTCTCATGATGGAACATGCCATGGTTTTGCGGTTTGGATTGAT
EST: TGGATTTCAACTTTTCTGAGCCAATCCACTCCTGTTTTGGGAAAACAAAG ATCGAGTTTTCTCATGATGGAACATGCCATGGTTTTGCGGTTTGGATTGAT
genomic: TGGATTTCAACTTTTCTGAGCCAATCCACTCCTGTTTTGGGAAAACAAAGgtatattttg ... ggccttgcagATCGAGTTTTCTCATGATGGAACATGCCATGGTTTTGCGGTTTGGATTGAT
tgcatttgtggtctgaaatgcgcatataattatcttactgtctacggccttgcagATCGAGTTTTCTCATGATGGAACATGCCATGGTTTTGCGGTTTGGATTGATTGGGTTCTTGATGAGAGAAAATCCGTTGTGTTAACAACCGGACCAG
atcttac putative branch site (score: 4)
atataattatcttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcgtgatcttaacaaatcatggaagtgctttctcagataaacatgcatttgtggtctgaaatgcgcatataattatcttactgtctacggccttgcagATCGAGTTTTCTCATGATGGAACATGCCATGGTTTTGCGGTTTGGATTGATTGGGTTCTTGATGAGAGAAAATCCGTTGTGTTAACAACCGGACCAG
- - - - - -taacaaa
- - - - - - - - - -catggaa
- - - - - - - - - - - - - -tgctttc
- - - - - - - - - - - - - - - - - - - - - acatgca