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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatataaatatataattctaccaccttaccataaaatctttcgtttctctccaacatatattaagcattttcttgtagATGGTTGCCCTTGTCGGAGAGAGCGGCTGTGGCAAATCAACCGTGATAGCACTACTGGAAAGATTTTACGACCCTGATTCAGGAACAGTGACACTAGACG

Basic information

species Oryza sativa
transcript LOC_Os05g47490.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g47490.1 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G082385_T01 (Zea mays), 3'ss of exon 11
------------gtaacatataaatatataattctaccaccttaccataaaatctttcgtttctctccaacatatattaagcattttcttgtagATGGTTGCCCTTGTCGGAGAGAGCGGCTGTGGCAAATCAACCGTGATAGCACTACTGGAAAGATTTTACGACCCTGATTCAGGAACAGTGACACTAGACG
              | | | |   | |||| || |||  |   | ||  | | ||        |  ||| ||   | | | | |||    | ||| |||||  |||||||| ||||||||||| |||||||| ||||| || || || ||||| || ||||||||||||||||| || ||  | ||| | ||||
gtacggaacctctcagcgttttcctttatagttttactgc--gatcagcagagctactagcagttaccagcaggcagttaac-tttgacggcagACGGTTGTGCTTGTCGGGGAGAGCGGCTGCGGCAAATCCACCGTCATCGCTCTCCTGGAGAGGTTTTACGACCCTGATTCCGGCACGATCACATTGGACG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttaccataaaatctttcgtttctctccaacatatattaagcattttcttgtagATGGTTGCCCTTGTCGGAGAGAGCGGCTGTGGCAAATCAACCGTGATAGCACTACTGGAAAGATTTTACGACCCTGATTCAGGAACAGTGACACTAGACG
 accttac  putative branch site (score: 3)
                                          cattttctt  putative PPT
                                atatattaagcatttt  TA-rich tract