1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtacaccatttcactgtttgcatggtgtgcattgtttttttcacttgattgcttcatctacttatttgtttcatatctttgcatatcacgtagGTCTTTTGAGAACCATGGTTAATGAGTTGAAGCAGGGCAGGTGTATAACACCAAAGCTGACATTTATCCATGGAGGACGAGAAGATCCAGCATTGTTTGA
species | Oryza sativa |
transcript | LOC_Os05g37120.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTATTCACCGTCTGCTGATCCTTCACTTCCTTTTCCTCCACCTCATGACT GTCTTTTGAGAACCATGATTAATGAGTTGAAGCAGGGCAGGTGTATAACACEST: gi|66912670|gb|CX099518.1|CX099518
genomic: CTATTCACCGTCTGCTGATCCTTCACTTCCTTTTCCTCCACCTCATGACTgtaagtacac ... tatcacgtagGTCTTTTGAGAACCATGGTTAATGAGTTGAAGCAGGGCAGGTGTATAACAC
EST: CTATTCACCGTCTGCTGATCCTTCACTTCCTTTTCCTCCACCTCATGACT GTCTTTTGAGAACCATGATTAATGAGTTGAAGCAGGGCAGGTGTATAACACEST: gi|86437489|gb|CI119211.1|CI119211
genomic: CTATTCACCGTCTGCTGATCCTTCACTTCCTTTTCCTCCACCTCATGACTgtaagtacac ... tatcacgtagGTCTTTTGAGAACCATGGTTAATGAGTTGAAGCAGGGCAGGTGTATAACAC
EST: CTATTCACCGTCTGCTGATCCTTCACTTCCTTTTCCTCCACCTCATGACT GTCTTTTGAGAACCATGGTTAATGAGTTGAAGCAGGGCAGGTGTATAACACEST: gi|87037648|gb|CI192270.1|CI192270
genomic: CTATTCACCGTCTGCTGATCCTTCACTTCCTTTTCCTCCACCTCATGACTgtaagtacac ... tatcacgtagGTCTTTTGAGAACCATGGTTAATGAGTTGAAGCAGGGCAGGTGTATAACAC
EST: CTATTCACCGTCTGCTGATCCTTCACTTCCTTTTCCTCCACCTCATGACT GTCTTTTGAGAACCATGGTTAATGAGTTGAAGCAGGGCAGGTGTATAACACEST: gi|24208894|gb|AU225921.1|AU225921
genomic: CTATTCACCGTCTGCTGATCCTTCACTTCCTTTTCCTCCACCTCATGACTgtaagtacac ... tatcacgtagGTCTTTTGAGAACCATGGTTAATGAGTTGAAGCAGGGCAGGTGTATAACAC
EST: TCCTCCACCTCATGACT GTCTTTTGAGAACCATGGTTAATGAGTTGAAGCAGGGCAGGTGTATAACACEST: gi|29630915|gb|CB635924.1|CB635924
genomic: TCCTCCACCTCATGACTgtaagtacac ... tatcacgtagGTCTTTTGAGAACCATGGTTAATGAGTTGAAGCAGGGCAGGTGTATAACAC
EST: CTATTCACCGTCTGCTGATCCTTCACTTCCTTTTCCTCCACCTCATGACT GTCTTTTGAGAACCATGATTAATGAGTTGAAGCAGGGCAGGTGTATAACACEST: gi|29616494|gb|CB621506.1|CB621506
genomic: CTATTCACCGTCTGCTGATCCTTCACTTCCTTTTCCTCCACCTCATGACTgtaagtacac ... tatcacgtagGTCTTTTGAGAACCATGGTTAATGAGTTGAAGCAGGGCAGGTGTATAACAC
EST: CTATTCACCGTCTGCTGATCCTTCACTTCCTTTTCCTCCACCTCATGACT GTCTTTTGAGAACCATGATTAATGAGTTGAAGCAGGGCAGGTGTATAACACEST: gi|29674496|gb|CB670771.1|CB670771
genomic: CTATTCACCGTCTGCTGATCCTTCACTTCCTTTTCCTCCACCTCATGACTgtaagtacac ... tatcacgtagGTCTTTTGAGAACCATGGTTAATGAGTTGAAGCAGGGCAGGTGTATAACAC
EST: CTATTCACCTTCTGCTGATCCTTCACTTCCTTTTCCTCCACCTCATGACT GTCTTTTGAGAACCATGGTTAATGAGTTGAAGCAGGGCAGGTGTATAACACEST: gi|58692848|gb|CK081535.1|CK081535
genomic: CTATTCACCGTCTGCTGATCCTTCACTTCCTTTTCCTCCACCTCATGACTgtaagtacac ... tatcacgtagGTCTTTTGAGAACCATGGTTAATGAGTTGAAGCAGGGCAGGTGTATAACAC
EST: CTATTCACCGTCTGCTGATCCTTCACTTCCTTTTCCTCCACCTCATGACT GTCTTTTGAGAACCATGATTAATGAGTTGAAGCAGGGCAGGTGTATAACAC
genomic: CTATTCACCGTCTGCTGATCCTTCACTTCCTTTTCCTCCACCTCATGACTgtaagtacac ... tatcacgtagGTCTTTTGAGAACCATGGTTAATGAGTTGAAGCAGGGCAGGTGTATAACAC
tttcacttgattgcttcatctacttatttgtttcatatctttgcatatcacgtagGTCTTTTGAGAACCATGGTTAATGAGTTGAAGCAGGGCAGGTGTATAACACCAAAGCTGACATTTATCCATGGAGGACGAGAAGATCCAGCATTGTTTGA
acttgat putative branch site (score: 3)
ttatttgtttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtacaccatttcactgtttgcatggtgtgcattgtttttttcacttgattgcttcatctacttatttgtttcatatctttgcatatcacgtagGTCTTTTGAGAACCATGGTTAATGAGTTGAAGCAGGGCAGGTGTATAACACCAAAGCTGACATTTATCCATGGAGGACGAGAAGATCCAGCATTGTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA