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...gctgctttggatctattttgctttatttggaattgaagccaattttctatctccaagcgtacaagttttttattgaaactcctttccgttgttattacagTGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTCATACTCGTCACCCGACAAGCAAGCATTCCCTCGGCATACGTTGAGCCGG
species | Oryza sativa |
transcript | LOC_Os05g37120.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAAGAAGGCATTCACCCAGATTACAGGATATATTTGCAATGCCTTTTCAG TGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTCEST: gi|66912670|gb|CX099518.1|CX099518
genomic: GAAGAAGGCATTCACCCAGATTACAGGATATATTTGCAATGCCTTTTCAGgtgggaaatc ... gttattacagTGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTC
EST: GAAGAAGGCATTCACCCAGATTACAGGATATATTTGCAATGCCTTTTCAG TGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTCEST: gi|396941502|gb|HO188711.1|HO188711
genomic: GAAGAAGGCATTCACCCAGATTACAGGATATATTTGCAATGCCTTTTCAGgtgggaaatc ... gttattacagTGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTC
EST: GAAGAAGGCATTCACCCAGATTACAGGATATATTTGCAATGCCTTTTCAG TGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTCEST: gi|29630915|gb|CB635924.1|CB635924
genomic: GAAGAAGGCATTCACCCAGATTACAGGATATATTTGCAATGCCTTTTCAGgtgggaaatc ... gttattacagTGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTC
EST: GAAGAAGGCATTCACCCAGATTACAGGATATATTTGCAATGCCTTTTCAG TGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTCEST: gi|27577801|gb|CB000496.1|CB000496
genomic: GAAGAAGGCATTCACCCAGATTACAGGATATATTTGCAATGCCTTTTCAGgtgggaaatc ... gttattacagTGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTC
EST: GAAGAAGGCATTCACCCAGATTACAGGATATATTTGCAATGCCTTTTCAG TGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTCEST: gi|29616494|gb|CB621506.1|CB621506
genomic: GAAGAAGGCATTCACCCAGATTACAGGATATATTTGCAATGCCTTTTCAGgtgggaaatc ... gttattacagTGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTC
EST: GAAGAAGGCATTCACCCAGATTACAGGATATATTTGCAATGCCTTTTCAG TGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTCEST: gi|29674496|gb|CB670771.1|CB670771
genomic: GAAGAAGGCATTCACCCAGATTACAGGATATATTTGCAATGCCTTTTCAGgtgggaaatc ... gttattacagTGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTC
EST: GAAGAAGGCATTCACCCAGATTACAGGATATATTTGCAATGCCTTTTCAG TGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTC
genomic: GAAGAAGGCATTCACCCAGATTACAGGATATATTTGCAATGCCTTTTCAGgtgggaaatc ... gttattacagTGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTC
tctatctccaagcgtacaagttttttattgaaactcctttccgttgttattacagTGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTCATACTCGTCACCCGACAAGCAAGCATTCCCTCGGCATACGTTGAGCCGG
ctcctttccgttgtt CT-rich tract
aagttttttattgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgctttggatctattttgctttatttggaattgaagccaattttctatctccaagcgtacaagttttttattgaaactcctttccgttgttattacagTGCCCTGGAGCCATCTTCTCTAGCCAAAGCTATATACCCAGTTTTAGTTTCATACTCGTCACCCGACAAGCAAGCATTCCCTCGGCATACGTTGAGCCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG