1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ccgggtagtttagtttctgttatgcgtatccttagttttacctttattgttttcgtattttattatgattatacttgctgacattttattacattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAGATACAGATAGCAAGCAAAACAAAAAGAAAGAGTAGGGCTCTAACAAGT
species | Oryza sativa |
transcript | LOC_Os05g36070.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|86874638|gb|CI318197.1|CI318197
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGTTGCTGTTCACT-TTTGTGGAATGGTGAAGTAAAGCAG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|88244093|gb|CI243215.1|CI243215
genomic: TGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|88249358|gb|CI249207.1|CI249207
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|86539354|gb|CI179560.1|CI179560
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|88841700|gb|CI080956.1|CI080956
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|86538870|gb|CI179076.1|CI179076
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|8859158|gb|AU096476.1|AU096476
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCNCTGTTTGTGGAATGGTGAAGTAAANCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAANAGGACGAAGCTTGTGAAGAAEST: gi|88260561|gb|CI362854.1|CI362854
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: GCTGTTCACTGTTTGGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|88487026|gb|CI424297.1|CI424297
genomic: GCTGTTCACTGTTT-GTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: GTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|86431507|gb|CI085118.1|CI085118
genomic: GTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|87028280|gb|CI111974.1|CI111974
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|86545734|gb|CI185940.1|CI185940
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|89174130|gb|CI042023.1|CI042023
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|86893354|gb|CI313446.1|CI313446
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|29628338|gb|CB633349.1|CB633349
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|86600029|gb|CI258369.1|CI258369
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAEST: gi|88845983|gb|CI084713.1|CI084713
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAG-TACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGA
EST: GTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|86435528|gb|CI106761.1|CI106761
genomic: GTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|29628337|gb|CB633348.1|CB633348
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|88473200|gb|CI410471.1|CI410471
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|86907972|gb|CI298768.1|CI298768
genomic: TTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|86431057|gb|CI083480.1|CI083480
genomic: TGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATCGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|86880509|gb|CI320999.1|CI320999
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGACGAGGAAGCTTGTGAAGAAEST: gi|86413082|gb|CI067487.1|CI067487
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAEST: gi|88840958|gb|CI000920.1|CI000920
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
EST: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCG CTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
genomic: TGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGgtaagtttgt ... acattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAA
attgttttcgtattttattatgattatacttgctgacattttattacattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAGATACAGATAGCAAGCAAAACAAAAAGAAAGAGTAGGGCTCTAACAAGT
tgctgac putative branch site (score: 2)
tttcgtattttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgggtagtttagtttctgttatgcgtatccttagttttacctttattgttttcgtattttattatgattatacttgctgacattttattacattgccagCTCCTTGAGTACAACGAGTCCAAAGCGGAAGAGGAGGAAGCTTGTGAAGAAGATACAGATAGCAAGCAAAACAAAAAGAAAGAGTAGGGCTCTAACAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA