1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...taacttagaaaaaattcataacttaggaaaaagtcaaagtatggttgtaatatgaaatggagggagtagcttctaatcctcctcattttccttggagcagTTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
species | Oryza sativa |
transcript | LOC_Os05g28200.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAG TTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAGEST: gi|27547699|gb|CA765724.2|CA765724
genomic: ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAGgtgagctggt ... cttggagcagTTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
EST: ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAG TTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAGEST: gi|88967759|gb|CI098001.1|CI098001
genomic: ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAGgtgagctggt ... cttggagcagTTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
EST: ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAG TTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAGEST: gi|86540861|gb|CI181067.1|CI181067
genomic: ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAGgtgagctggt ... cttggagcagTTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
EST: GCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAG TTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAGEST: gi|86494917|gb|CI137550.1|CI137550
genomic: GCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAGgtgagctggt ... cttggagcagTTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
EST: ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAG TTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAGEST: gi|3763399|gb|AU030151.1|AU030151
genomic: ATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAGgtgagctggt ... cttggagcagTTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
EST: TCCTCAGGTGGTCTTTCAG TTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
genomic: TCCTCAGGTGGTCTTTCAGgtgagctggt ... cttggagcagTTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
tgtaatatgaaatggagggagtagcttctaatcctcctcattttccttggagcagTTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
ttctaat putative branch site (score: 45)
cttctaatcctcctca CT-rich tract
tatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacttagaaaaaattcataacttaggaaaaagtcaaagtatggttgtaatatgaaatggagggagtagcttctaatcctcctcattttccttggagcagTTCCAATACTTCCTCAAGGACCCTGTGAAGTATGACGTCAAATACCAG
- - - -gaaaaaa
- - - - - - - - - - - - aggaaaa
- - - - - - - - - - - - - - - - - - - - atggttg