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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attattctgaggattgctatgttttcgagtggcgaccctagtactttcgaagcaccataaaatattgcattattctgacaaaatgaattccatttttcagGCTACCTTTTCAGTTCCGGCAAGCCTTATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAG

Basic information

species Oryza sativa
transcript LOC_Os05g28200.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27547699|gb|CA765724.2|CA765724
EST:     GGATATGTGTAGGAGCGATTGACATAACTCAATTATCCGTTGCAG                         GCTACCTTTTCAGTTCCGGCAAGCCTTATTATGCCCTGGCACTGCTAGGAC
genomic: GGATATGTGTAGGAGCGATTGACATAACTCAATTATCCGTTGCAGgtaaagacat ... catttttcagGCTACCTTTTCAGTTCCGGCAAGCCTTATTATGCCCTGGCACTGCTAGGAC
EST: gi|88967759|gb|CI098001.1|CI098001
EST:     TTATCCGTTGCAG                         GCTACCTTTTCAGTTCCGGCAAGCCTTATTATGCCCTGGCACTGCTAGGAC
genomic: TTATCCGTTGCAGgtaaagacat ... catttttcagGCTACCTTTTCAGTTCCGGCAAGCCTTATTATGCCCTGGCACTGCTAGGAC
EST: gi|86494917|gb|CI137550.1|CI137550
EST:     AAAGTGGAAATGTGTAGGAGCGATTGACATAACTCCATTATCCGTTGCAG                         GCTACCTTTTCAGTTCCGGCAAGCCTTATTATGCCCTGGCACTGCTAGGAC
genomic: AAAGTGGATATGTGTAGGAGCGATTGACATAACTCAATTATCCGTTGCAGgtaaagacat ... catttttcagGCTACCTTTTCAGTTCCGGCAAGCCTTATTATGCCCTGGCACTGCTAGGAC
EST: gi|86906508|gb|CI294631.1|CI294631
EST:     AAAGTGGATATGTGTAGGAGCGATTGACATAACTCAATTATCCGTTGCAG                         GCTACCTTTTCAGTTCCGGCAAGCCTTATTATGCCCTGGCACTGCTAGGAC
genomic: AAAGTGGATATGTGTAGGAGCGATTGACATAACTCAATTATCCGTTGCAGgtaaagacat ... catttttcagGCTACCTTTTCAGTTCCGGCAAGCCTTATTATGCCCTGGCACTGCTAGGAC
EST: gi|86596619|gb|CI286532.1|CI286532
EST:     AAAGTGGATATGTGTAGGAGCGATTGACATAACTCAATTATCCGTTGCAG                         GCTACCTTTTCAGTTCCGGCAAGCCTTATTATGCCCTGGCACTGCTAGGAC
genomic: AAAGTGGATATGTGTAGGAGCGATTGACATAACTCAATTATCCGTTGCAGgtaaagacat ... catttttcagGCTACCTTTTCAGTTCCGGCAAGCCTTATTATGCCCTGGCACTGCTAGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgaagcaccataaaatattgcattattctgacaaaatgaattccatttttcagGCTACCTTTTCAGTTCCGGCAAGCCTTATTATGCCCTGGCACTGCTAGGACTCACAATTCCTCAGGTGGTCTTTCAG
                           ttctgac  putative branch site (score: 2)
                                          ttccatttttc  putative PPT
           ataaaatattgcatta  TA-rich tract