1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttagtattgaccttttttattcttatgtagttgtatcactttctttccctcctgaaaacagagggagctaagcagctaactgtgatgggtttattctctagGTAATCATATGGTGGGCAGGTCTCATGAGAGGAGCAGTATCAATAGCACTTGCCTATCACAAG
species | Oryza sativa |
transcript | LOC_Os05g05590.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTAAAAAAGAGACACGCCCAAAGATCTCNTTCAAGCAGCAA GTAATCATATGGTGGGCAGGTCTCATGAGAGGAGCAGTATCAATAGCACTTEST: gi|29677873|gb|CB674148.1|CB674148
genomic: GTAAAAAAGAGACACGCCCAAAGATCTCCTTCAAGCAGCAAgttagtattg ... tattctctagGTAATCATATGGTGGGCAGGTCTCATGAGAGGAGCAGTATCAATAGCACTT
EST: CCAATCTAAGTAAAAAAGAGACACGCCCAAAGATCTCNTTCAAGCAGCAA GTAATCATATGGTGGGCAGGTCTCATGAGAGGAGCAGTATCAATAGCACTTEST: gi|29675121|gb|CB671396.1|CB671396
genomic: CCAATCTAAGTAAAAAAGAGACACGCCCAAAGATCTCCTTCAAGCAGCAAgttagtattg ... tattctctagGTAATCATATGGTGGGCAGGTCTCATGAGAGGAGCAGTATCAATAGCACTT
EST: CCAATCTAAGTAAAAAAGAGACACGCCCAAAGATCTCCTTCAAGCAGCAA GTAATCATATGGTGGGCAGGTCTCATGAGAGGAGCAGTATCAATAGCACTTEST: gi|29672522|gb|CB668797.1|CB668797
genomic: CCAATCTAAGTAAAAAAGAGACACGCCCAAAGATCTCCTTCAAGCAGCAAgttagtattg ... tattctctagGTAATCATATGGTGGGCAGGTCTCATGAGAGGAGCAGTATCAATAGCACTT
EST: CCAATCTAAGTAAAAAAGAGACACGCCCAAAGATCTCCTTCAAGCAGCAA GTAATCATATGGTGGGCAGGTCTCATGAGAGGAGCAGTATCAATAGCACTTEST: gi|29685382|gb|CB681657.1|CB681657
genomic: CCAATCTAAGTAAAAAAGAGACACGCCCAAAGATCTCCTTCAAGCAGCAAgttagtattg ... tattctctagGTAATCATATGGTGGGCAGGTCTCATGAGAGGAGCAGTATCAATAGCACTT
EST: CCAATCTAAGTAAAAAAGAGACACGCCCAAAGATCTCCTTCAAGCAGCAA GTAATCATATGGTGGGCAGGTCTCATGAGAGGAGCAGTATCAATAGCACTTEST: gi|29672523|gb|CB668798.1|CB668798
genomic: CCAATCTAAGTAAAAAAGAGACACGCCCAAAGATCTCCTTCAAGCAGCAAgttagtattg ... tattctctagGTAATCATATGGTGGGCAGGTCTCATGAGAGGAGCAGTATCAATAGCACTT
EST: CCAATCTAAGTAAAAAAGAGACACGCCCAAAGATCTCCTTCAAGCAGCAA GTAATCATATGGTGGGCAGGTCTCATGAGAGGAGCAGTATCAATAGCACTTEST: gi|29628631|gb|CB633642.1|CB633642
genomic: CCAATCTAAGTAAAAAAGAGACACGCCCAAAGATCTCCTTCAAGCAGCAAgttagtattg ... tattctctagGTAATCATATGGTGGGCAGGTCTCATGAGAGGAGCAGTATCAATAGCACTT
EST: CCAATCTAAGTAAAAAAGAGACACGCCCAAAGATCTCCTTCAAGCAGCAA GTAATCATATGGTGGGCAGGTCTCATGAGAGGAGCAGTATCAATAGCACTT
genomic: CCAATCTAAGTAAAAAAGAGACACGCCCAAAGATCTCCTTCAAGCAGCAAgttagtattg ... tattctctagGTAATCATATGGTGGGCAGGTCTCATGAGAGGAGCAGTATCAATAGCACTT
ccctcctgaaaacagagggagctaagcagctaactgtgatgggtttattctctagGTAATCATATGGTGGGCAGGTCTCATGAGAGGAGCAGTATCAATAGCACTTGCCTATCACAAG
agctaac putative branch site (score: 12)
tttattctct putative PPT
tttattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtattgaccttttttattcttatgtagttgtatcactttctttccctcctgaaaacagagggagctaagcagctaactgtgatgggtttattctctagGTAATCATATGGTGGGCAGGTCTCATGAGAGGAGCAGTATCAATAGCACTTGCCTATCACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG