1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagcttgcaacaccggctgacatatgacatgcgtagacgaaaatttctgaaccaccgatcaacttataattatctactaatctggccgatttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATGCTCGAAAGCAATGCGCGTTTGTAGGATGGTGATTTCTGAGGTCAGCATG
species | Oryza sativa |
transcript | LOC_Os05g04340.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATG AACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATGEST: gi|33798704|gb|CF325210.1|CF325210
genomic: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgtaagcttgc ... atttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATG
EST: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATG AACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATGEST: gi|29629559|gb|CB634568.1|CB634568
genomic: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgtaagcttgc ... atttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATG
EST: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATG AACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATGEST: gi|86256515|gb|CI061278.1|CI061278
genomic: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgtaagcttgc ... atttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATG
EST: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATG AACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATGEST: gi|88849654|gb|CI089760.1|CI089760
genomic: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgtaagcttgc ... atttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATG
EST: CGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATG AACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTNATCCCCGAACATGEST: gi|25804076|gb|CA760037.1|CA760037
genomic: CGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgtaagcttgc ... atttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATG
EST: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATG AACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATGEST: gi|86251622|gb|CI016911.1|CI016911
genomic: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgtaagcttgc ... atttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATG
EST: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATG AACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATGEST: gi|86482760|gb|CI125393.1|CI125393
genomic: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgtaagcttgc ... atttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATG
EST: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATG AACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATGEST: gi|51946083|gb|CV152424.1|CV152424
genomic: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgtaagcttgc ... atttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATG
EST: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATG AACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATGEST: gi|86425762|gb|CI070859.1|CI070859
genomic: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgtaagcttgc ... atttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATG
EST: GAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATG AACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATGEST: gi|29623769|gb|CB628780.1|CB628780
genomic: GAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgtaagcttgc ... atttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATG
EST: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATG AACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATGEST: gi|88845458|gb|CI084383.1|CI084383
genomic: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgtaagcttgc ... atttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATG
EST: ACTTCAAGCCCCATG AACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATGEST: gi|88839091|gb|CI378015.1|CI378015
genomic: ACTTCAAGCCCCATGgtaagcttgc ... atttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATG
EST: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATG AACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATGEST: gi|87024245|gb|CI256986.1|CI256986
genomic: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgtaagcttgc ... atttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATG
EST: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATG AACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATGEST: gi|86433457|gb|CI093800.1|CI093800
genomic: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgtaagcttgc ... atttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATG
EST: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATG AACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATGEST: gi|88828410|gb|CI073280.1|CI073280
genomic: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgtaagcttgc ... atttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATG
EST: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATG AACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATG
genomic: CTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgtaagcttgc ... atttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATG
tttctgaaccaccgatcaacttataattatctactaatctggccgatttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATGCTCGAAAGCAATGCGCGTTTGTAGGATGGTGATTTCTGAGGTCAGCATG
tactaat putative branch site (score: 14)
aacttataattatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttgcaacaccggctgacatatgacatgcgtagacgaaaatttctgaaccaccgatcaacttataattatctactaatctggccgatttgaacagAACTGAAGGGTATGCCAATGGAATTCCTGGTGAAGCTTATCCCCGAACATGCTCGAAAGCAATGCGCGTTTGTAGGATGGTGATTTCTGAGGTCAGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG